Hb_010795_010

Information

Type -
Description -
Location Contig10795: 14336-18509
Sequence    

Annotation

kegg
ID rcu:RCOM_1274940
description protein with unknown function (EC:3.1.4.12)
nr
ID XP_002528238.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9FGK5
description Ras-related protein RABA5a OS=Arabidopsis thaliana GN=RABA5A PE=2 SV=1
trembl
ID B9SQG9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1274940 PE=3 SV=1
Gene Ontology
ID GO:0005774
description ras-related protein raba5a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02369: 14352-18478 , PASA_asmbl_02370: 14352-17143 , PASA_asmbl_02371: 14380-18478 , PASA_asmbl_02372: 14380-17143
cDNA
(Sanger)
(ID:Location)		 023_D06.ab1: 14352-16243 , 032_K02.ab1: 14352-16380 , 036_O06.ab1: 14352-16402

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010795_010 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_002518_140 0.0668448071 - - hypothetical protein JCGZ_18870 [Jatropha curcas]
3 Hb_000030_010 0.0725768448 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
4 Hb_171900_080 0.0737571206 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
5 Hb_000123_120 0.0833893961 - - actin depolymerizing factor 4 [Hevea brasiliensis]
6 Hb_000392_300 0.0836715618 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
7 Hb_019654_100 0.0859190814 - - PREDICTED: tRNA pseudouridine synthase A, mitochondrial-like [Jatropha curcas]
8 Hb_000120_950 0.0897631795 - - PREDICTED: protein GRIP [Jatropha curcas]
9 Hb_001623_420 0.0905490972 - - nucleotide binding protein, putative [Ricinus communis]
10 Hb_002027_250 0.0919144331 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_007547_010 0.0929981723 - - PREDICTED: diphthamide biosynthesis protein 1 [Jatropha curcas]
12 Hb_003862_050 0.0950903294 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105641042 [Jatropha curcas]
13 Hb_002685_140 0.0958755873 - - PREDICTED: membrin-11 [Jatropha curcas]
14 Hb_001439_150 0.095978379 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial [Jatropha curcas]
15 Hb_000000_080 0.0964480114 - - lipoate-protein ligase B, putative [Ricinus communis]
16 Hb_001277_330 0.0976835624 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
17 Hb_011571_010 0.0990631113 - - Metal tolerance protein C4, putative [Ricinus communis]
18 Hb_002496_030 0.0991811277 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
19 Hb_024071_010 0.0994031905 - - ADP-ribosylation factor, putative [Ricinus communis]
20 Hb_002888_030 0.0998738765 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1 [Jatropha curcas]

Gene co-expression network

sample Hb_010795_010 Hb_010795_010 Hb_002518_140 Hb_002518_140 Hb_010795_010--Hb_002518_140 Hb_000030_010 Hb_000030_010 Hb_010795_010--Hb_000030_010 Hb_171900_080 Hb_171900_080 Hb_010795_010--Hb_171900_080 Hb_000123_120 Hb_000123_120 Hb_010795_010--Hb_000123_120 Hb_000392_300 Hb_000392_300 Hb_010795_010--Hb_000392_300 Hb_019654_100 Hb_019654_100 Hb_010795_010--Hb_019654_100 Hb_001277_330 Hb_001277_330 Hb_002518_140--Hb_001277_330 Hb_013405_030 Hb_013405_030 Hb_002518_140--Hb_013405_030 Hb_010172_050 Hb_010172_050 Hb_002518_140--Hb_010172_050 Hb_002518_140--Hb_171900_080 Hb_126643_020 Hb_126643_020 Hb_002518_140--Hb_126643_020 Hb_000120_950 Hb_000120_950 Hb_000030_010--Hb_000120_950 Hb_005062_070 Hb_005062_070 Hb_000030_010--Hb_005062_070 Hb_003609_040 Hb_003609_040 Hb_000030_010--Hb_003609_040 Hb_007547_010 Hb_007547_010 Hb_000030_010--Hb_007547_010 Hb_001623_420 Hb_001623_420 Hb_000030_010--Hb_001623_420 Hb_000030_010--Hb_000392_300 Hb_171900_080--Hb_001277_330 Hb_003266_130 Hb_003266_130 Hb_171900_080--Hb_003266_130 Hb_171900_080--Hb_000123_120 Hb_178968_110 Hb_178968_110 Hb_171900_080--Hb_178968_110 Hb_000008_470 Hb_000008_470 Hb_000123_120--Hb_000008_470 Hb_000754_060 Hb_000754_060 Hb_000123_120--Hb_000754_060 Hb_003862_050 Hb_003862_050 Hb_000123_120--Hb_003862_050 Hb_010381_070 Hb_010381_070 Hb_000123_120--Hb_010381_070 Hb_011224_110 Hb_011224_110 Hb_000123_120--Hb_011224_110 Hb_006065_020 Hb_006065_020 Hb_000392_300--Hb_006065_020 Hb_006185_050 Hb_006185_050 Hb_000392_300--Hb_006185_050 Hb_048937_040 Hb_048937_040 Hb_000392_300--Hb_048937_040 Hb_000089_220 Hb_000089_220 Hb_000392_300--Hb_000089_220 Hb_002496_030 Hb_002496_030 Hb_000392_300--Hb_002496_030 Hb_019654_100--Hb_003862_050 Hb_019654_100--Hb_000754_060 Hb_019654_100--Hb_000120_950 Hb_175338_030 Hb_175338_030 Hb_019654_100--Hb_175338_030 Hb_000436_070 Hb_000436_070 Hb_019654_100--Hb_000436_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
66.0581 28.2779 25.2506 17.1994 60.8749 41.4814
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.6876 53.4184 71.186 15.1672 23.6495

CAGE analysis