Hb_010810_060

Information

Type -
Description -
Location Contig10810: 27108-29175
Sequence    

Annotation

kegg
ID rcu:RCOM_1728170
description sterol desaturase, putative (EC:1.14.21.6)
nr
ID XP_002516756.1
description sterol desaturase, putative [Ricinus communis]
swissprot
ID Q9ZT29
description Delta(7)-sterol-C5(6)-desaturase OS=Nicotiana tabacum PE=2 SV=1
trembl
ID B9RSN7
description Sterol desaturase, putative OS=Ricinus communis GN=RCOM_1728170 PE=4 SV=1
Gene Ontology
ID GO:0005506
description delta -sterol-c5 -desaturase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02469: 24700-29205
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010810_060 0.0 - - sterol desaturase, putative [Ricinus communis]
2 Hb_005730_060 0.0974982447 - - PREDICTED: inorganic pyrophosphatase 1-like [Jatropha curcas]
3 Hb_000031_180 0.1067065224 - - sarcosine oxidase, putative [Ricinus communis]
4 Hb_027472_060 0.1134679367 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
5 Hb_001474_060 0.1136531071 transcription factor TF Family: ARF PREDICTED: auxin response factor 16 [Jatropha curcas]
6 Hb_000599_150 0.1143782315 - - PREDICTED: probable arabinose 5-phosphate isomerase [Jatropha curcas]
7 Hb_001699_080 0.114489486 - - unnamed protein product [Coffea canephora]
8 Hb_005656_120 0.1165346212 - - PREDICTED: uncharacterized protein LOC105637451 [Jatropha curcas]
9 Hb_149694_010 0.1185123267 - - Xylem serine proteinase 1 precursor, putative [Ricinus communis]
10 Hb_003835_080 0.1195461328 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK1 isoform X2 [Jatropha curcas]
11 Hb_004032_280 0.124337506 - - PREDICTED: uncharacterized protein LOC105635149 [Jatropha curcas]
12 Hb_000103_130 0.1245588128 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
13 Hb_003417_050 0.1258241358 - - ankyrin repeat-containing protein, putative [Ricinus communis]
14 Hb_005295_020 0.1261409037 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Populus euphratica]
15 Hb_000951_150 0.1262539279 - - hypothetical protein POPTR_0015s05850g [Populus trichocarpa]
16 Hb_052530_020 0.1271323095 - - cytochrome B5 isoform 1, putative [Ricinus communis]
17 Hb_143629_170 0.1284685106 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
18 Hb_001159_230 0.1300461782 - - Kinesin heavy chain, putative [Ricinus communis]
19 Hb_002740_050 0.1302179347 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86-like [Populus euphratica]
20 Hb_007904_150 0.1305669294 - - PREDICTED: probable pectate lyase 5 [Populus euphratica]

Gene co-expression network

sample Hb_010810_060 Hb_010810_060 Hb_005730_060 Hb_005730_060 Hb_010810_060--Hb_005730_060 Hb_000031_180 Hb_000031_180 Hb_010810_060--Hb_000031_180 Hb_027472_060 Hb_027472_060 Hb_010810_060--Hb_027472_060 Hb_001474_060 Hb_001474_060 Hb_010810_060--Hb_001474_060 Hb_000599_150 Hb_000599_150 Hb_010810_060--Hb_000599_150 Hb_001699_080 Hb_001699_080 Hb_010810_060--Hb_001699_080 Hb_005730_060--Hb_027472_060 Hb_003835_080 Hb_003835_080 Hb_005730_060--Hb_003835_080 Hb_001538_080 Hb_001538_080 Hb_005730_060--Hb_001538_080 Hb_001159_230 Hb_001159_230 Hb_005730_060--Hb_001159_230 Hb_005730_060--Hb_000031_180 Hb_000031_180--Hb_000599_150 Hb_000329_780 Hb_000329_780 Hb_000031_180--Hb_000329_780 Hb_004032_280 Hb_004032_280 Hb_000031_180--Hb_004032_280 Hb_000031_180--Hb_027472_060 Hb_002119_100 Hb_002119_100 Hb_000031_180--Hb_002119_100 Hb_006831_090 Hb_006831_090 Hb_000031_180--Hb_006831_090 Hb_027472_060--Hb_004032_280 Hb_005842_010 Hb_005842_010 Hb_027472_060--Hb_005842_010 Hb_027472_060--Hb_000329_780 Hb_002572_040 Hb_002572_040 Hb_027472_060--Hb_002572_040 Hb_027472_060--Hb_000599_150 Hb_001257_050 Hb_001257_050 Hb_001474_060--Hb_001257_050 Hb_000005_370 Hb_000005_370 Hb_001474_060--Hb_000005_370 Hb_000008_070 Hb_000008_070 Hb_001474_060--Hb_000008_070 Hb_001474_060--Hb_005730_060 Hb_019654_180 Hb_019654_180 Hb_001474_060--Hb_019654_180 Hb_000599_150--Hb_004032_280 Hb_052530_020 Hb_052530_020 Hb_000599_150--Hb_052530_020 Hb_000599_150--Hb_000329_780 Hb_000599_150--Hb_002572_040 Hb_007483_090 Hb_007483_090 Hb_000599_150--Hb_007483_090 Hb_000103_130 Hb_000103_130 Hb_001699_080--Hb_000103_130 Hb_001512_130 Hb_001512_130 Hb_001699_080--Hb_001512_130 Hb_015807_130 Hb_015807_130 Hb_001699_080--Hb_015807_130 Hb_000270_380 Hb_000270_380 Hb_001699_080--Hb_000270_380 Hb_002081_020 Hb_002081_020 Hb_001699_080--Hb_002081_020 Hb_005656_120 Hb_005656_120 Hb_001699_080--Hb_005656_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.447407 0.905193 12.238 23.7428 0 0.374387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.492257 0.68824 0.157688 0.935555 22.425

CAGE analysis