Hb_010810_070

Information

Type -
Description -
Location Contig10810: 31099-42297
Sequence    

Annotation

kegg
ID rcu:RCOM_1728300
description serine/threonine kinase, putative (EC:2.7.10.2)
nr
ID XP_002516759.1
description serine/threonine kinase, putative [Ricinus communis]
swissprot
ID D7SFH9
description Glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2 OS=Arabidopsis thaliana GN=GDPDL2 PE=1 SV=1
trembl
ID B9RSP0
description Serine/threonine kinase, putative OS=Ricinus communis GN=RCOM_1728300 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010810_070 0.0 - - serine/threonine kinase, putative [Ricinus communis]
2 Hb_000920_070 0.1351592473 - - -
3 Hb_003376_280 0.1764262445 - - ATP binding protein, putative [Ricinus communis]
4 Hb_003780_010 0.1846762233 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000190_130 0.1847176042 - - cysteine protease inhibitor [Populus tremula]
6 Hb_093039_010 0.1849203193 - - JHL22C18.10 [Jatropha curcas]
7 Hb_000574_490 0.1849925907 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
8 Hb_006907_110 0.1857024629 - - -
9 Hb_000575_050 0.1858042871 - - hypothetical protein CISIN_1g0468601mg, partial [Citrus sinensis]
10 Hb_021888_160 0.1860901007 - - -
11 Hb_002570_050 0.1869804505 - - PREDICTED: uncharacterized protein LOC104897677 [Beta vulgaris subsp. vulgaris]
12 Hb_000501_080 0.1872292896 - - hypothetical protein OsJ_22457 [Oryza sativa Japonica Group]
13 Hb_174662_020 0.1872847461 - - PREDICTED: uncharacterized protein LOC104888075 [Beta vulgaris subsp. vulgaris]
14 Hb_007810_080 0.1881864205 - - PREDICTED: uncharacterized protein LOC103491654 [Cucumis melo]
15 Hb_169514_010 0.1905158442 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
16 Hb_000052_030 0.1920146725 - - -
17 Hb_003927_030 0.1923827107 - - unnamed protein product [Coffea canephora]
18 Hb_169597_010 0.193891743 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
19 Hb_002110_220 0.194096189 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007622_010 0.1952804546 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]

Gene co-expression network

sample Hb_010810_070 Hb_010810_070 Hb_000920_070 Hb_000920_070 Hb_010810_070--Hb_000920_070 Hb_003376_280 Hb_003376_280 Hb_010810_070--Hb_003376_280 Hb_003780_010 Hb_003780_010 Hb_010810_070--Hb_003780_010 Hb_000190_130 Hb_000190_130 Hb_010810_070--Hb_000190_130 Hb_093039_010 Hb_093039_010 Hb_010810_070--Hb_093039_010 Hb_000574_490 Hb_000574_490 Hb_010810_070--Hb_000574_490 Hb_155556_010 Hb_155556_010 Hb_000920_070--Hb_155556_010 Hb_001780_010 Hb_001780_010 Hb_000920_070--Hb_001780_010 Hb_001524_020 Hb_001524_020 Hb_000920_070--Hb_001524_020 Hb_095835_010 Hb_095835_010 Hb_000920_070--Hb_095835_010 Hb_057638_010 Hb_057638_010 Hb_000920_070--Hb_057638_010 Hb_002110_220 Hb_002110_220 Hb_003376_280--Hb_002110_220 Hb_007622_010 Hb_007622_010 Hb_003376_280--Hb_007622_010 Hb_042083_020 Hb_042083_020 Hb_003376_280--Hb_042083_020 Hb_002387_030 Hb_002387_030 Hb_003376_280--Hb_002387_030 Hb_007810_080 Hb_007810_080 Hb_003376_280--Hb_007810_080 Hb_174662_020 Hb_174662_020 Hb_003376_280--Hb_174662_020 Hb_003780_010--Hb_000574_490 Hb_006907_110 Hb_006907_110 Hb_003780_010--Hb_006907_110 Hb_000575_050 Hb_000575_050 Hb_003780_010--Hb_000575_050 Hb_003780_010--Hb_000190_130 Hb_021888_160 Hb_021888_160 Hb_003780_010--Hb_021888_160 Hb_003780_010--Hb_093039_010 Hb_000190_130--Hb_093039_010 Hb_002570_050 Hb_002570_050 Hb_000190_130--Hb_002570_050 Hb_000190_130--Hb_000574_490 Hb_000190_130--Hb_006907_110 Hb_000190_130--Hb_000575_050 Hb_093039_010--Hb_002570_050 Hb_093039_010--Hb_000574_490 Hb_093039_010--Hb_006907_110 Hb_093039_010--Hb_000575_050 Hb_000574_490--Hb_006907_110 Hb_000574_490--Hb_000575_050 Hb_000574_490--Hb_021888_160 Hb_000501_080 Hb_000501_080 Hb_000574_490--Hb_000501_080 Hb_000574_490--Hb_174662_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0695914 0.0125094 0 0 0.0521789
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.224616 2.54304 2.4994

CAGE analysis