Hb_010812_010

Information

Type -
Description -
Location Contig10812: 3396-5247
Sequence    

Annotation

kegg
ID pop:POPTR_0019s08760g
description POPTRDRAFT_738723; hypothetical protein
nr
ID KDP21635.1
description hypothetical protein JCGZ_03306 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNR0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03306 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ubiquinol-cytochrome c reductase complex kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02471: 3464-5245 , PASA_asmbl_02472: 3413-5218
cDNA
(Sanger)
(ID:Location)		 011_F14.ab1: 3507-5218 , 022_P15.ab1: 3413-5218 , 045_P08.ab1: 3480-5218 , 048_G01.ab1: 3413-5218

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010812_010 0.0 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
2 Hb_011161_050 0.0617389913 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
3 Hb_000024_030 0.0787385462 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
4 Hb_001433_050 0.0810258649 - - 60S ribosomal protein L18, putative [Ricinus communis]
5 Hb_000975_110 0.0818579437 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
6 Hb_000364_020 0.0862173318 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
7 Hb_000751_130 0.0863930001 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
8 Hb_002539_090 0.0893371491 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
9 Hb_010172_030 0.0899295836 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
10 Hb_000086_550 0.0900930639 - - Os02g0814700 [Oryza sativa Japonica Group]
11 Hb_001829_060 0.0901704564 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
12 Hb_000199_070 0.090224313 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003561_030 0.0907468923 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
14 Hb_003964_100 0.0921492984 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]
15 Hb_002835_320 0.0922849569 - - 60S ribosomal protein L27B [Hevea brasiliensis]
16 Hb_005357_130 0.0923043819 - - hypothetical protein L484_012905 [Morus notabilis]
17 Hb_012265_010 0.0923436517 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
18 Hb_004336_050 0.0928300985 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
19 Hb_003053_030 0.0951780737 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
20 Hb_003623_050 0.0976513491 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010812_010 Hb_010812_010 Hb_011161_050 Hb_011161_050 Hb_010812_010--Hb_011161_050 Hb_000024_030 Hb_000024_030 Hb_010812_010--Hb_000024_030 Hb_001433_050 Hb_001433_050 Hb_010812_010--Hb_001433_050 Hb_000975_110 Hb_000975_110 Hb_010812_010--Hb_000975_110 Hb_000364_020 Hb_000364_020 Hb_010812_010--Hb_000364_020 Hb_000751_130 Hb_000751_130 Hb_010812_010--Hb_000751_130 Hb_011161_050--Hb_000975_110 Hb_003561_030 Hb_003561_030 Hb_011161_050--Hb_003561_030 Hb_011161_050--Hb_000364_020 Hb_000199_070 Hb_000199_070 Hb_011161_050--Hb_000199_070 Hb_000086_550 Hb_000086_550 Hb_011161_050--Hb_000086_550 Hb_000024_030--Hb_000975_110 Hb_000024_030--Hb_001433_050 Hb_124755_010 Hb_124755_010 Hb_000024_030--Hb_124755_010 Hb_004032_100 Hb_004032_100 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530 Hb_002471_080 Hb_002471_080 Hb_000024_030--Hb_002471_080 Hb_001383_060 Hb_001383_060 Hb_001433_050--Hb_001383_060 Hb_148200_010 Hb_148200_010 Hb_001433_050--Hb_148200_010 Hb_003927_130 Hb_003927_130 Hb_001433_050--Hb_003927_130 Hb_007479_020 Hb_007479_020 Hb_001433_050--Hb_007479_020 Hb_148930_010 Hb_148930_010 Hb_001433_050--Hb_148930_010 Hb_000722_040 Hb_000722_040 Hb_000975_110--Hb_000722_040 Hb_000975_110--Hb_003561_030 Hb_001307_090 Hb_001307_090 Hb_000975_110--Hb_001307_090 Hb_000975_110--Hb_001433_050 Hb_000364_020--Hb_000086_550 Hb_000283_110 Hb_000283_110 Hb_000364_020--Hb_000283_110 Hb_004336_050 Hb_004336_050 Hb_000364_020--Hb_004336_050 Hb_000364_020--Hb_000975_110 Hb_000364_020--Hb_000751_130 Hb_001829_060 Hb_001829_060 Hb_000751_130--Hb_001829_060 Hb_000274_020 Hb_000274_020 Hb_000751_130--Hb_000274_020 Hb_000087_020 Hb_000087_020 Hb_000751_130--Hb_000087_020 Hb_000751_130--Hb_004032_100 Hb_000046_110 Hb_000046_110 Hb_000751_130--Hb_000046_110 Hb_000172_030 Hb_000172_030 Hb_000751_130--Hb_000172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.8944 6.98263 18.544 58.0018 49.0689 117.729
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
154.472 227.863 122.689 49.6713 33.6386

CAGE analysis