Hb_010812_030

Information

Type -
Description -
Location Contig10812: 8029-8445
Sequence    

Annotation

kegg
ID rcu:RCOM_0690180
description hypothetical protein
nr
ID XP_002520889.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S4H0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0690180 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02477: 7920-8141
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010812_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000029_150 0.0615717225 - - conserved hypothetical protein [Ricinus communis]
3 Hb_158597_010 0.064277312 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
4 Hb_000221_130 0.0647130079 - - thylakoid lumenal 29 kDa protein, chloroplastic [Jatropha curcas]
5 Hb_001269_480 0.0673146561 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 1, chloroplastic [Jatropha curcas]
6 Hb_005483_050 0.0695188773 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005736_030 0.0704061275 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
8 Hb_132840_050 0.0736613915 - - PREDICTED: protein CURVATURE THYLAKOID 1B, chloroplastic [Jatropha curcas]
9 Hb_000243_190 0.0738434866 transcription factor TF Family: MIKC flowering-related B-class MADS-box protein [Vitis vinifera]
10 Hb_000940_060 0.0742769657 - - hypothetical protein POPTR_0009s13250g [Populus trichocarpa]
11 Hb_007044_020 0.0757719838 - - unnamed protein product [Vitis vinifera]
12 Hb_001310_020 0.0775864959 - - PREDICTED: cyclin-D5-1-like isoform X2 [Jatropha curcas]
13 Hb_002818_130 0.0798392313 - - cytochrome P450, putative [Ricinus communis]
14 Hb_000251_160 0.0818825465 - - chlorophyll A/B binding protein, putative [Ricinus communis]
15 Hb_000704_020 0.0821699834 - - conserved hypothetical protein [Ricinus communis]
16 Hb_010697_020 0.082524351 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003053_080 0.0831130679 - - conserved hypothetical protein [Ricinus communis]
18 Hb_013405_240 0.0853542336 - - Hydroxyproline-rich glycoprotein family protein [Theobroma cacao]
19 Hb_001348_160 0.0865735351 - - Photosystem II 22 kDa protein, chloroplast precursor, putative [Ricinus communis]
20 Hb_007416_250 0.0875367221 - - -

Gene co-expression network

sample Hb_010812_030 Hb_010812_030 Hb_000029_150 Hb_000029_150 Hb_010812_030--Hb_000029_150 Hb_158597_010 Hb_158597_010 Hb_010812_030--Hb_158597_010 Hb_000221_130 Hb_000221_130 Hb_010812_030--Hb_000221_130 Hb_001269_480 Hb_001269_480 Hb_010812_030--Hb_001269_480 Hb_005483_050 Hb_005483_050 Hb_010812_030--Hb_005483_050 Hb_005736_030 Hb_005736_030 Hb_010812_030--Hb_005736_030 Hb_013405_240 Hb_013405_240 Hb_000029_150--Hb_013405_240 Hb_000243_190 Hb_000243_190 Hb_000029_150--Hb_000243_190 Hb_007416_250 Hb_007416_250 Hb_000029_150--Hb_007416_250 Hb_000029_150--Hb_005736_030 Hb_132840_050 Hb_132840_050 Hb_000029_150--Hb_132840_050 Hb_013818_020 Hb_013818_020 Hb_000029_150--Hb_013818_020 Hb_000940_060 Hb_000940_060 Hb_158597_010--Hb_000940_060 Hb_000433_040 Hb_000433_040 Hb_158597_010--Hb_000433_040 Hb_081344_010 Hb_081344_010 Hb_158597_010--Hb_081344_010 Hb_010666_020 Hb_010666_020 Hb_158597_010--Hb_010666_020 Hb_000152_300 Hb_000152_300 Hb_158597_010--Hb_000152_300 Hb_004818_010 Hb_004818_010 Hb_158597_010--Hb_004818_010 Hb_000221_130--Hb_001269_480 Hb_007044_020 Hb_007044_020 Hb_000221_130--Hb_007044_020 Hb_008948_130 Hb_008948_130 Hb_000221_130--Hb_008948_130 Hb_001310_020 Hb_001310_020 Hb_000221_130--Hb_001310_020 Hb_001191_060 Hb_001191_060 Hb_000221_130--Hb_001191_060 Hb_001269_480--Hb_001191_060 Hb_002818_130 Hb_002818_130 Hb_001269_480--Hb_002818_130 Hb_001269_480--Hb_001310_020 Hb_001348_160 Hb_001348_160 Hb_001269_480--Hb_001348_160 Hb_086022_020 Hb_086022_020 Hb_001269_480--Hb_086022_020 Hb_005483_050--Hb_000243_190 Hb_005483_050--Hb_000940_060 Hb_005483_050--Hb_132840_050 Hb_180007_010 Hb_180007_010 Hb_005483_050--Hb_180007_010 Hb_005483_050--Hb_000029_150 Hb_000251_160 Hb_000251_160 Hb_005483_050--Hb_000251_160 Hb_020805_090 Hb_020805_090 Hb_005736_030--Hb_020805_090 Hb_004712_230 Hb_004712_230 Hb_005736_030--Hb_004712_230 Hb_000629_110 Hb_000629_110 Hb_005736_030--Hb_000629_110 Hb_004631_020 Hb_004631_020 Hb_005736_030--Hb_004631_020 Hb_004807_040 Hb_004807_040 Hb_005736_030--Hb_004807_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.10119 0.232735 21.4071 12.3327 0 0.20483
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.184208 0.434059 0 0.0615318 83.5175

CAGE analysis