Hb_010812_100

Information

Type -
Description -
Location Contig10812: 61796-63433
Sequence    

Annotation

kegg
ID rcu:RCOM_0690210
description inorganic phosphate transporter, putative
nr
ID AIY53216.1
description phosphate transporter [Manihot esculenta]
swissprot
ID Q94DB8
description Inorganic phosphate transporter 1-11 OS=Oryza sativa subsp. japonica GN=PHT1-11 PE=2 SV=1
trembl
ID A0A0A1G3V7
description Phosphate transporter OS=Manihot esculenta GN=PT1;7 PE=2 SV=1
Gene Ontology
ID GO:0016021
description probable inorganic phosphate transporter 1-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02502: 64193-67010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010812_100 0.0 - - phosphate transporter [Manihot esculenta]
2 Hb_000005_180 0.1688341642 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000008_360 0.1867910756 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
4 Hb_140439_010 0.1891147847 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
5 Hb_004093_020 0.1893691841 - - Calcium-binding EF-hand family protein [Theobroma cacao]
6 Hb_002836_120 0.1895772323 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 isoform X1 [Populus euphratica]
7 Hb_169116_010 0.1930015003 - - PREDICTED: fatty-acid-binding protein 1 [Jatropha curcas]
8 Hb_000365_130 0.1970695175 - - PREDICTED: uncharacterized protein LOC105649044 [Jatropha curcas]
9 Hb_019837_040 0.1971588581 - - PREDICTED: histone-lysine N-methyltransferase SETD1B [Jatropha curcas]
10 Hb_002909_020 0.2022977663 - - PREDICTED: uncharacterized protein LOC105632476 [Jatropha curcas]
11 Hb_001863_130 0.2027492 - - hypothetical protein ZEAMMB73_433257, partial [Zea mays]
12 Hb_001114_160 0.2086996725 - - PREDICTED: beta carbonic anhydrase 5, chloroplastic [Jatropha curcas]
13 Hb_000105_050 0.2093971877 - - Inositol-tetrakisphosphate 1-kinase, putative [Ricinus communis]
14 Hb_000300_200 0.2141661869 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
15 Hb_000256_080 0.216062434 - - PREDICTED: deSI-like protein At4g17486 [Jatropha curcas]
16 Hb_001488_030 0.2163646014 - - biotin carboxyl carrier protein [Vernicia fordii]
17 Hb_000740_040 0.2163884558 - - PREDICTED: uncharacterized protein LOC105126082 [Populus euphratica]
18 Hb_002811_290 0.2171066539 - - aldo/keto reductase, putative [Ricinus communis]
19 Hb_001056_030 0.2203777965 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X2 [Jatropha curcas]
20 Hb_001234_070 0.221995322 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein Sgpp [Populus euphratica]

Gene co-expression network

sample Hb_010812_100 Hb_010812_100 Hb_000005_180 Hb_000005_180 Hb_010812_100--Hb_000005_180 Hb_000008_360 Hb_000008_360 Hb_010812_100--Hb_000008_360 Hb_140439_010 Hb_140439_010 Hb_010812_100--Hb_140439_010 Hb_004093_020 Hb_004093_020 Hb_010812_100--Hb_004093_020 Hb_002836_120 Hb_002836_120 Hb_010812_100--Hb_002836_120 Hb_169116_010 Hb_169116_010 Hb_010812_100--Hb_169116_010 Hb_000005_180--Hb_002836_120 Hb_001488_030 Hb_001488_030 Hb_000005_180--Hb_001488_030 Hb_001329_090 Hb_001329_090 Hb_000005_180--Hb_001329_090 Hb_000005_180--Hb_169116_010 Hb_003077_150 Hb_003077_150 Hb_000005_180--Hb_003077_150 Hb_000442_040 Hb_000442_040 Hb_000005_180--Hb_000442_040 Hb_000390_110 Hb_000390_110 Hb_000008_360--Hb_000390_110 Hb_000008_360--Hb_002836_120 Hb_001056_030 Hb_001056_030 Hb_000008_360--Hb_001056_030 Hb_000008_360--Hb_140439_010 Hb_000008_360--Hb_000005_180 Hb_140439_010--Hb_002836_120 Hb_000331_460 Hb_000331_460 Hb_140439_010--Hb_000331_460 Hb_140439_010--Hb_000005_180 Hb_140439_010--Hb_169116_010 Hb_001951_130 Hb_001951_130 Hb_004093_020--Hb_001951_130 Hb_001377_450 Hb_001377_450 Hb_004093_020--Hb_001377_450 Hb_000365_130 Hb_000365_130 Hb_004093_020--Hb_000365_130 Hb_083380_020 Hb_083380_020 Hb_004093_020--Hb_083380_020 Hb_004093_020--Hb_001056_030 Hb_001863_130 Hb_001863_130 Hb_004093_020--Hb_001863_130 Hb_002836_120--Hb_001488_030 Hb_002836_120--Hb_000390_110 Hb_002836_120--Hb_001329_090 Hb_002836_120--Hb_169116_010 Hb_169116_010--Hb_001488_030 Hb_019837_040 Hb_019837_040 Hb_169116_010--Hb_019837_040 Hb_000105_100 Hb_000105_100 Hb_169116_010--Hb_000105_100 Hb_169116_010--Hb_000442_040 Hb_009851_010 Hb_009851_010 Hb_169116_010--Hb_009851_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0680369 0.0205192 0.123929 0.0938355 0.0116165 0.0122535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0847145 0.0666501 0.0418743 0 0.046641

CAGE analysis