Hb_010812_110

Information

Type -
Description -
Location Contig10812: 64330-67168
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09010g
description hypothetical protein
nr
ID XP_006371315.1
description putative plant disease resistance family protein [Populus trichocarpa]
swissprot
ID Q9LVM0
description Probable inactive receptor kinase At5g58300 OS=Arabidopsis thaliana GN=At5g58300 PE=2 SV=1
trembl
ID B9N1T5
description Putative plant disease resistance family protein OS=Populus trichocarpa GN=POPTR_0019s09010g PE=4 SV=1
Gene Ontology
ID GO:0005618
description probable inactive receptor kinase at5g58300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02502: 64193-67010 , PASA_asmbl_02503: 65174-65323
cDNA
(Sanger)
(ID:Location)		 051_C08.ab1: 66284-67010 , 052_O21.ab1: 66272-67004

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010812_110 0.0 - - putative plant disease resistance family protein [Populus trichocarpa]
2 Hb_001474_040 0.1327161674 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 [Jatropha curcas]
3 Hb_000844_030 0.1409471434 - - ent-kaurene oxidase, putative [Ricinus communis]
4 Hb_026740_020 0.1471207718 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
5 Hb_000226_070 0.1473595824 - - PREDICTED: pyrophosphate-energized vacuolar membrane proton pump [Jatropha curcas]
6 Hb_014497_040 0.1489527223 - - PREDICTED: calvin cycle protein CP12-3, chloroplastic [Jatropha curcas]
7 Hb_005941_030 0.1490593982 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
8 Hb_001754_060 0.1496421324 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
9 Hb_012762_060 0.1527922828 - - Vitellogenic carboxypeptidase, putative [Ricinus communis]
10 Hb_002289_150 0.1605656236 - - PREDICTED: cellulose synthase A catalytic subunit 3 [UDP-forming]-like [Jatropha curcas]
11 Hb_002367_110 0.1647967774 - - PREDICTED: cinnamyl alcohol dehydrogenase 1 [Sesamum indicum]
12 Hb_000138_060 0.1649914623 - - PREDICTED: protein trichome birefringence [Jatropha curcas]
13 Hb_011828_010 0.1651578567 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]
14 Hb_000236_160 0.1656800474 - - PREDICTED: UDP-glucuronate 4-epimerase 6 [Jatropha curcas]
15 Hb_000300_230 0.166718579 - - PREDICTED: cation/calcium exchanger 2 [Jatropha curcas]
16 Hb_000193_300 0.1667421395 - - PREDICTED: putative glycosyltransferase 5 [Jatropha curcas]
17 Hb_020586_010 0.1681652618 - - Alpha-N-arabinofuranosidase 1 precursor, putative [Ricinus communis]
18 Hb_004449_090 0.1689196818 - - PREDICTED: CO(2)-response secreted protease-like [Jatropha curcas]
19 Hb_030565_050 0.1751987475 - - UDP-D-GLUCURONATE 4-EPIMERASE 6 family protein [Populus trichocarpa]
20 Hb_000330_020 0.1752281667 - - PREDICTED: isoflavone reductase-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_010812_110 Hb_010812_110 Hb_001474_040 Hb_001474_040 Hb_010812_110--Hb_001474_040 Hb_000844_030 Hb_000844_030 Hb_010812_110--Hb_000844_030 Hb_026740_020 Hb_026740_020 Hb_010812_110--Hb_026740_020 Hb_000226_070 Hb_000226_070 Hb_010812_110--Hb_000226_070 Hb_014497_040 Hb_014497_040 Hb_010812_110--Hb_014497_040 Hb_005941_030 Hb_005941_030 Hb_010812_110--Hb_005941_030 Hb_000281_060 Hb_000281_060 Hb_001474_040--Hb_000281_060 Hb_002498_050 Hb_002498_050 Hb_001474_040--Hb_002498_050 Hb_000818_100 Hb_000818_100 Hb_001474_040--Hb_000818_100 Hb_001474_040--Hb_000844_030 Hb_001474_040--Hb_000226_070 Hb_000330_020 Hb_000330_020 Hb_000844_030--Hb_000330_020 Hb_004738_030 Hb_004738_030 Hb_000844_030--Hb_004738_030 Hb_012762_060 Hb_012762_060 Hb_000844_030--Hb_012762_060 Hb_000094_190 Hb_000094_190 Hb_000844_030--Hb_000094_190 Hb_000193_300 Hb_000193_300 Hb_026740_020--Hb_000193_300 Hb_000413_020 Hb_000413_020 Hb_026740_020--Hb_000413_020 Hb_000138_060 Hb_000138_060 Hb_026740_020--Hb_000138_060 Hb_002289_150 Hb_002289_150 Hb_026740_020--Hb_002289_150 Hb_005192_010 Hb_005192_010 Hb_026740_020--Hb_005192_010 Hb_000265_140 Hb_000265_140 Hb_026740_020--Hb_000265_140 Hb_000300_230 Hb_000300_230 Hb_000226_070--Hb_000300_230 Hb_002129_020 Hb_002129_020 Hb_000226_070--Hb_002129_020 Hb_000300_520 Hb_000300_520 Hb_000226_070--Hb_000300_520 Hb_002046_150 Hb_002046_150 Hb_000226_070--Hb_002046_150 Hb_014497_040--Hb_005941_030 Hb_000012_400 Hb_000012_400 Hb_014497_040--Hb_000012_400 Hb_003029_060 Hb_003029_060 Hb_014497_040--Hb_003029_060 Hb_000562_100 Hb_000562_100 Hb_014497_040--Hb_000562_100 Hb_004631_170 Hb_004631_170 Hb_014497_040--Hb_004631_170 Hb_000071_160 Hb_000071_160 Hb_005941_030--Hb_000071_160 Hb_011828_010 Hb_011828_010 Hb_005941_030--Hb_011828_010 Hb_005941_030--Hb_003029_060 Hb_014361_090 Hb_014361_090 Hb_005941_030--Hb_014361_090 Hb_009838_020 Hb_009838_020 Hb_005941_030--Hb_009838_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.53733 3.82467 2.38878 13.6265 3.02987 2.54079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.666727 0.286156 0.725369 1.64927 3.87446

CAGE analysis