Hb_010812_140

Information

Type -
Description -
Location Contig10812: 90229-97739
Sequence    

Annotation

kegg
ID rcu:RCOM_0126330
description protein binding protein, putative
nr
ID XP_002531811.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0P2
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_0126330 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02509: 90839-91013 , PASA_asmbl_02510: 91138-91567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010812_140 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_000685_040 0.1201587248 - - hypothetical protein OsJ_17676 [Oryza sativa Japonica Group]
3 Hb_007320_020 0.1344199657 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X2 [Populus euphratica]
4 Hb_012023_010 0.1406811224 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001619_010 0.1460297974 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
6 Hb_003767_010 0.1504256325 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11 [Jatropha curcas]
7 Hb_031949_010 0.1561383039 - - -
8 Hb_029866_110 0.1594655021 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 10-like [Jatropha curcas]
9 Hb_000600_080 0.1645926574 - - -
10 Hb_109489_010 0.1656143569 - - multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative [Ricinus communis]
11 Hb_000191_100 0.1684888799 - - cytochrome P450, putative [Ricinus communis]
12 Hb_005470_040 0.1699009486 - - hypothetical protein POPTR_0015s09760g [Populus trichocarpa]
13 Hb_001519_240 0.1738630367 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
14 Hb_016637_020 0.1760376377 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
15 Hb_007382_070 0.1768793481 - - PREDICTED: MAPK-interacting and spindle-stabilizing protein-like [Jatropha curcas]
16 Hb_005618_110 0.1773801896 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
17 Hb_031862_200 0.1794998546 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
18 Hb_006096_020 0.1797184289 - - Os06g0343500 [Oryza sativa Japonica Group]
19 Hb_123560_050 0.1802652141 - - PREDICTED: probable receptor-like protein kinase At5g24010 [Jatropha curcas]
20 Hb_000059_080 0.1811406077 - - PREDICTED: uncharacterized protein LOC105629177 [Jatropha curcas]

Gene co-expression network

sample Hb_010812_140 Hb_010812_140 Hb_000685_040 Hb_000685_040 Hb_010812_140--Hb_000685_040 Hb_007320_020 Hb_007320_020 Hb_010812_140--Hb_007320_020 Hb_012023_010 Hb_012023_010 Hb_010812_140--Hb_012023_010 Hb_001619_010 Hb_001619_010 Hb_010812_140--Hb_001619_010 Hb_003767_010 Hb_003767_010 Hb_010812_140--Hb_003767_010 Hb_031949_010 Hb_031949_010 Hb_010812_140--Hb_031949_010 Hb_000685_040--Hb_007320_020 Hb_001675_130 Hb_001675_130 Hb_000685_040--Hb_001675_130 Hb_010813_030 Hb_010813_030 Hb_000685_040--Hb_010813_030 Hb_000685_040--Hb_003767_010 Hb_000649_280 Hb_000649_280 Hb_000685_040--Hb_000649_280 Hb_001971_020 Hb_001971_020 Hb_007320_020--Hb_001971_020 Hb_000059_080 Hb_000059_080 Hb_007320_020--Hb_000059_080 Hb_007320_020--Hb_003767_010 Hb_000377_160 Hb_000377_160 Hb_007320_020--Hb_000377_160 Hb_006096_020 Hb_006096_020 Hb_012023_010--Hb_006096_020 Hb_012023_010--Hb_001619_010 Hb_012023_010--Hb_000059_080 Hb_000600_080 Hb_000600_080 Hb_012023_010--Hb_000600_080 Hb_001677_230 Hb_001677_230 Hb_012023_010--Hb_001677_230 Hb_001619_010--Hb_001677_230 Hb_005016_120 Hb_005016_120 Hb_001619_010--Hb_005016_120 Hb_001619_010--Hb_006096_020 Hb_001963_110 Hb_001963_110 Hb_001619_010--Hb_001963_110 Hb_003767_010--Hb_000377_160 Hb_003767_010--Hb_000649_280 Hb_029866_110 Hb_029866_110 Hb_003767_010--Hb_029866_110 Hb_002217_200 Hb_002217_200 Hb_003767_010--Hb_002217_200 Hb_123560_050 Hb_123560_050 Hb_003767_010--Hb_123560_050 Hb_109489_010 Hb_109489_010 Hb_003767_010--Hb_109489_010 Hb_005470_040 Hb_005470_040 Hb_031949_010--Hb_005470_040 Hb_031949_010--Hb_000377_160 Hb_001856_110 Hb_001856_110 Hb_031949_010--Hb_001856_110 Hb_000009_390 Hb_000009_390 Hb_031949_010--Hb_000009_390 Hb_026053_030 Hb_026053_030 Hb_031949_010--Hb_026053_030 Hb_000417_150 Hb_000417_150 Hb_031949_010--Hb_000417_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.127306 0.039562 0.0268513 0 0.0149695
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.196017 0.190364

CAGE analysis