Hb_010815_020

Information

Type -
Description -
Location Contig10815: 8142-15095
Sequence    

Annotation

kegg
ID pop:POPTR_0001s01170g
description glycosyl hydrolase family 31 family protein
nr
ID CBI29243.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9F234
description Alpha-glucosidase 2 OS=Bacillus thermoamyloliquefaciens PE=3 SV=1
trembl
ID F6HJ59
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0087g00060 PE=3 SV=1
Gene Ontology
ID GO:0009507
description neutral alpha-glucosidase c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010815_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_004897_010 0.1103038022 - - -
3 Hb_000286_200 0.1426457864 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
4 Hb_004870_040 0.1693948045 - - -
5 Hb_003098_080 0.1754675348 - - -
6 Hb_000172_190 0.1793337281 - - PREDICTED: uncharacterized protein LOC105650824 [Jatropha curcas]
7 Hb_012022_050 0.1810497145 - - hypothetical protein EUGRSUZ_B02804 [Eucalyptus grandis]
8 Hb_000723_170 0.1904229751 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
9 Hb_000031_260 0.1908386796 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
10 Hb_009711_050 0.1923022536 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
11 Hb_001221_340 0.1946823877 - - hypothetical protein EUGRSUZ_B00102 [Eucalyptus grandis]
12 Hb_001452_210 0.1967272209 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
13 Hb_000227_070 0.1994350934 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
14 Hb_000012_410 0.2005995838 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
15 Hb_000203_140 0.2011718895 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
16 Hb_052764_110 0.2048129397 - - PREDICTED: quinone oxidoreductase PIG3 isoform X1 [Jatropha curcas]
17 Hb_001673_100 0.2067402591 - - PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Jatropha curcas]
18 Hb_001510_020 0.2091111924 - - Diaminopimelate epimerase, putative [Ricinus communis]
19 Hb_000510_240 0.2097338315 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
20 Hb_007383_020 0.2101653711 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010815_020 Hb_010815_020 Hb_004897_010 Hb_004897_010 Hb_010815_020--Hb_004897_010 Hb_000286_200 Hb_000286_200 Hb_010815_020--Hb_000286_200 Hb_004870_040 Hb_004870_040 Hb_010815_020--Hb_004870_040 Hb_003098_080 Hb_003098_080 Hb_010815_020--Hb_003098_080 Hb_000172_190 Hb_000172_190 Hb_010815_020--Hb_000172_190 Hb_012022_050 Hb_012022_050 Hb_010815_020--Hb_012022_050 Hb_004897_010--Hb_000286_200 Hb_000649_140 Hb_000649_140 Hb_004897_010--Hb_000649_140 Hb_000031_260 Hb_000031_260 Hb_004897_010--Hb_000031_260 Hb_000286_060 Hb_000286_060 Hb_004897_010--Hb_000286_060 Hb_001953_080 Hb_001953_080 Hb_004897_010--Hb_001953_080 Hb_000510_240 Hb_000510_240 Hb_000286_200--Hb_000510_240 Hb_000227_070 Hb_000227_070 Hb_000286_200--Hb_000227_070 Hb_000012_410 Hb_000012_410 Hb_000286_200--Hb_000012_410 Hb_000286_200--Hb_000286_060 Hb_001452_210 Hb_001452_210 Hb_000286_200--Hb_001452_210 Hb_002908_060 Hb_002908_060 Hb_004870_040--Hb_002908_060 Hb_001673_100 Hb_001673_100 Hb_004870_040--Hb_001673_100 Hb_022593_010 Hb_022593_010 Hb_004870_040--Hb_022593_010 Hb_000946_110 Hb_000946_110 Hb_004870_040--Hb_000946_110 Hb_023827_020 Hb_023827_020 Hb_004870_040--Hb_023827_020 Hb_009711_050 Hb_009711_050 Hb_004870_040--Hb_009711_050 Hb_003098_080--Hb_001452_210 Hb_003098_080--Hb_002908_060 Hb_003098_080--Hb_001673_100 Hb_001318_050 Hb_001318_050 Hb_003098_080--Hb_001318_050 Hb_002539_020 Hb_002539_020 Hb_003098_080--Hb_002539_020 Hb_007383_020 Hb_007383_020 Hb_003098_080--Hb_007383_020 Hb_000828_050 Hb_000828_050 Hb_000172_190--Hb_000828_050 Hb_000172_190--Hb_000031_260 Hb_003947_040 Hb_003947_040 Hb_000172_190--Hb_003947_040 Hb_000345_250 Hb_000345_250 Hb_000172_190--Hb_000345_250 Hb_000172_190--Hb_004897_010 Hb_002477_010 Hb_002477_010 Hb_012022_050--Hb_002477_010 Hb_012022_050--Hb_007383_020 Hb_032920_070 Hb_032920_070 Hb_012022_050--Hb_032920_070 Hb_001946_310 Hb_001946_310 Hb_012022_050--Hb_001946_310 Hb_000297_120 Hb_000297_120 Hb_012022_050--Hb_000297_120 Hb_005648_010 Hb_005648_010 Hb_012022_050--Hb_005648_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.303365 0.542765 0.267688 3.17684 0.310675 0.607973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.31014 2.77803 0.730306 4.53186 4.22791

CAGE analysis