Hb_010827_020

Information

Type -
Description -
Location Contig10827: 15745-18390
Sequence    

Annotation

kegg
ID cmo:103488896
description 60S ribosomal protein L17-2
nr
ID ADR71275.1
description 60S ribosomal protein L17B [Hevea brasiliensis]
swissprot
ID P51413
description 60S ribosomal protein L17-2 OS=Arabidopsis thaliana GN=RPL17B PE=2 SV=2
trembl
ID I3NMN8
description 60S ribosomal protein L17B OS=Hevea brasiliensis GN=RPL17B PE=2 SV=1
Gene Ontology
ID GO:0015934
description 60s ribosomal protein l17-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02526: 17493-18035
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010827_020 0.0 - - 60S ribosomal protein L17B [Hevea brasiliensis]
2 Hb_001832_120 0.0851533093 - - hypothetical protein PHAVU_003G136800g [Phaseolus vulgaris]
3 Hb_002248_100 0.0914339025 - - hypothetical protein VITISV_027197 [Vitis vinifera]
4 Hb_000635_080 0.1118248664 - - 60S ribosomal protein L17A [Hevea brasiliensis]
5 Hb_000780_210 0.1194178263 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
6 Hb_001700_020 0.1219299729 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
7 Hb_183086_040 0.1275301046 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
8 Hb_001017_070 0.1301425734 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000483_250 0.1339608165 - - PREDICTED: uncharacterized protein LOC105803540 [Gossypium raimondii]
10 Hb_007943_140 0.1371787173 - - PREDICTED: uncharacterized protein LOC103340977 [Prunus mume]
11 Hb_000613_170 0.1372144817 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
12 Hb_000085_330 0.1383318562 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
13 Hb_001016_090 0.1384306839 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 1 [Populus euphratica]
14 Hb_060618_010 0.1392786216 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
15 Hb_001863_090 0.1405660301 - - hypothetical protein POPTR_0006s07000g [Populus trichocarpa]
16 Hb_001377_380 0.1446108608 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
17 Hb_032260_030 0.1456092338 - - hypothetical protein POPTR_0001s10500g [Populus trichocarpa]
18 Hb_001538_100 0.1465098344 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
19 Hb_000172_420 0.1466572307 - - 60S ribosomal protein L30, putative [Ricinus communis]
20 Hb_000836_140 0.1467113327 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_010827_020 Hb_010827_020 Hb_001832_120 Hb_001832_120 Hb_010827_020--Hb_001832_120 Hb_002248_100 Hb_002248_100 Hb_010827_020--Hb_002248_100 Hb_000635_080 Hb_000635_080 Hb_010827_020--Hb_000635_080 Hb_000780_210 Hb_000780_210 Hb_010827_020--Hb_000780_210 Hb_001700_020 Hb_001700_020 Hb_010827_020--Hb_001700_020 Hb_183086_040 Hb_183086_040 Hb_010827_020--Hb_183086_040 Hb_001016_090 Hb_001016_090 Hb_001832_120--Hb_001016_090 Hb_001863_090 Hb_001863_090 Hb_001832_120--Hb_001863_090 Hb_032260_030 Hb_032260_030 Hb_001832_120--Hb_032260_030 Hb_148930_010 Hb_148930_010 Hb_001832_120--Hb_148930_010 Hb_001832_120--Hb_001700_020 Hb_000172_420 Hb_000172_420 Hb_002248_100--Hb_000172_420 Hb_002248_100--Hb_000635_080 Hb_007943_140 Hb_007943_140 Hb_002248_100--Hb_007943_140 Hb_006588_080 Hb_006588_080 Hb_002248_100--Hb_006588_080 Hb_172221_010 Hb_172221_010 Hb_002248_100--Hb_172221_010 Hb_001377_380 Hb_001377_380 Hb_000635_080--Hb_001377_380 Hb_000635_080--Hb_000780_210 Hb_000635_080--Hb_006588_080 Hb_004545_130 Hb_004545_130 Hb_000635_080--Hb_004545_130 Hb_002316_120 Hb_002316_120 Hb_000635_080--Hb_002316_120 Hb_000780_210--Hb_001377_380 Hb_000780_210--Hb_183086_040 Hb_000820_130 Hb_000820_130 Hb_000780_210--Hb_000820_130 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020 Hb_026048_070 Hb_026048_070 Hb_001700_020--Hb_026048_070 Hb_001700_020--Hb_001016_090 Hb_000163_130 Hb_000163_130 Hb_001700_020--Hb_000163_130 Hb_001700_020--Hb_000780_210 Hb_000389_080 Hb_000389_080 Hb_001700_020--Hb_000389_080 Hb_012265_010 Hb_012265_010 Hb_001700_020--Hb_012265_010 Hb_000922_100 Hb_000922_100 Hb_183086_040--Hb_000922_100 Hb_000896_120 Hb_000896_120 Hb_183086_040--Hb_000896_120 Hb_000215_180 Hb_000215_180 Hb_183086_040--Hb_000215_180 Hb_000085_330 Hb_000085_330 Hb_183086_040--Hb_000085_330 Hb_000224_090 Hb_000224_090 Hb_183086_040--Hb_000224_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.313 7.08997 4.14305 6.45457 10.7623 11.5874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.1161 89.5269 25.5 33.6499 3.42805

CAGE analysis