Hb_010831_020

Information

Type -
Description -
Location Contig10831: 7496-18051
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID Q9T048
description Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02537: 12141-16251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010831_020 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_001638_040 0.1080184837 - - Nucleobase-ascorbate transporter 3 [Glycine soja]
3 Hb_000540_120 0.1086590131 - - PREDICTED: probable serine/threonine-protein kinase RLCKVII [Jatropha curcas]
4 Hb_001691_150 0.1264502142 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 24 [Jatropha curcas]
5 Hb_002316_050 0.1325869076 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002739_150 0.1351189645 - - Uncharacterized protein TCM_016791 [Theobroma cacao]
7 Hb_155702_010 0.1352411271 - - Tetraspanin-5 [Gossypium arboreum]
8 Hb_011465_030 0.1360566322 - - PREDICTED: B2 protein [Jatropha curcas]
9 Hb_007257_050 0.1407011749 - - protein with unknown function [Ricinus communis]
10 Hb_084429_010 0.1472723267 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Populus euphratica]
11 Hb_002002_030 0.1474924942 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
12 Hb_001493_010 0.1477583685 - - triacylglycerol acidic lipase TAL4 [Ricinus communis]
13 Hb_001907_100 0.1499620914 - - PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]
14 Hb_000808_070 0.1523674169 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
15 Hb_000886_060 0.1534102175 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
16 Hb_075449_020 0.1535733609 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
17 Hb_000453_100 0.1547270076 - - PREDICTED: metallothionein-like protein 1 [Sesamum indicum]
18 Hb_003710_040 0.1569577193 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
19 Hb_001301_230 0.1587395226 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
20 Hb_009028_030 0.1613481571 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]

Gene co-expression network

sample Hb_010831_020 Hb_010831_020 Hb_001638_040 Hb_001638_040 Hb_010831_020--Hb_001638_040 Hb_000540_120 Hb_000540_120 Hb_010831_020--Hb_000540_120 Hb_001691_150 Hb_001691_150 Hb_010831_020--Hb_001691_150 Hb_002316_050 Hb_002316_050 Hb_010831_020--Hb_002316_050 Hb_002739_150 Hb_002739_150 Hb_010831_020--Hb_002739_150 Hb_155702_010 Hb_155702_010 Hb_010831_020--Hb_155702_010 Hb_001638_040--Hb_000540_120 Hb_000449_050 Hb_000449_050 Hb_001638_040--Hb_000449_050 Hb_164010_070 Hb_164010_070 Hb_001638_040--Hb_164010_070 Hb_000853_030 Hb_000853_030 Hb_001638_040--Hb_000853_030 Hb_001638_040--Hb_002739_150 Hb_011465_030 Hb_011465_030 Hb_000540_120--Hb_011465_030 Hb_007403_050 Hb_007403_050 Hb_000540_120--Hb_007403_050 Hb_001189_130 Hb_001189_130 Hb_000540_120--Hb_001189_130 Hb_000140_070 Hb_000140_070 Hb_000540_120--Hb_000140_070 Hb_003125_030 Hb_003125_030 Hb_000540_120--Hb_003125_030 Hb_000525_010 Hb_000525_010 Hb_001691_150--Hb_000525_010 Hb_000025_330 Hb_000025_330 Hb_001691_150--Hb_000025_330 Hb_000665_010 Hb_000665_010 Hb_001691_150--Hb_000665_010 Hb_001691_150--Hb_002739_150 Hb_002837_110 Hb_002837_110 Hb_001691_150--Hb_002837_110 Hb_002316_050--Hb_001638_040 Hb_000265_250 Hb_000265_250 Hb_002316_050--Hb_000265_250 Hb_003633_140 Hb_003633_140 Hb_002316_050--Hb_003633_140 Hb_000808_070 Hb_000808_070 Hb_002316_050--Hb_000808_070 Hb_018133_030 Hb_018133_030 Hb_002316_050--Hb_018133_030 Hb_002316_050--Hb_000540_120 Hb_001055_030 Hb_001055_030 Hb_002739_150--Hb_001055_030 Hb_156850_070 Hb_156850_070 Hb_002739_150--Hb_156850_070 Hb_006663_030 Hb_006663_030 Hb_002739_150--Hb_006663_030 Hb_080451_010 Hb_080451_010 Hb_002739_150--Hb_080451_010 Hb_155702_010--Hb_011465_030 Hb_017075_030 Hb_017075_030 Hb_155702_010--Hb_017075_030 Hb_002002_030 Hb_002002_030 Hb_155702_010--Hb_002002_030 Hb_001769_010 Hb_001769_010 Hb_155702_010--Hb_001769_010 Hb_032202_240 Hb_032202_240 Hb_155702_010--Hb_032202_240 Hb_003106_150 Hb_003106_150 Hb_155702_010--Hb_003106_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7902 26.2251 1.81844 11.5057 11.3108 17.7385
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.06791 4.20376 3.1728 5.83709 1.64763

CAGE analysis