Hb_010863_010

Information

Type transcription factor
Description TF Family: C3H
Location Contig10863: 6269-10785
Sequence    

Annotation

kegg
ID rcu:RCOM_0555400
description nucleic acid binding protein, putative
nr
ID XP_002520668.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q84W91
description Zinc finger CCCH domain-containing protein 32 OS=Arabidopsis thaliana GN=At2g47850 PE=2 SV=2
trembl
ID B9S3U9
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0555400 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 32-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02610: 6306-6432 , PASA_asmbl_02611: 6510-11099
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010863_010 0.0 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
2 Hb_000614_240 0.0725177938 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
3 Hb_000120_080 0.0779911246 - - PREDICTED: probable pyridoxal 5'-phosphate synthase subunit PDX1 [Jatropha curcas]
4 Hb_004787_050 0.080689739 - - PREDICTED: RINT1-like protein MAG2 [Jatropha curcas]
5 Hb_005634_010 0.0844637017 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_002471_090 0.0857614321 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
7 Hb_002456_010 0.0872701736 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
8 Hb_007904_130 0.0883679076 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_000011_060 0.0884735402 - - PREDICTED: exportin-7 isoform X1 [Jatropha curcas]
10 Hb_005396_150 0.0899731594 - - protein binding protein, putative [Ricinus communis]
11 Hb_000025_790 0.0921542728 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
12 Hb_003544_060 0.093319851 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
13 Hb_001105_020 0.0933219661 - - expressed protein, putative [Ricinus communis]
14 Hb_001170_030 0.0933568415 - - synaptonemal complex protein, putative [Ricinus communis]
15 Hb_000580_120 0.0934865702 - - PREDICTED: transketolase, chloroplastic [Jatropha curcas]
16 Hb_000109_180 0.0957621957 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
17 Hb_010422_010 0.0958982794 - - phosphofructokinase [Hevea brasiliensis]
18 Hb_001999_310 0.0962148424 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
19 Hb_002675_130 0.0966224136 - - PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit isoform X1 [Jatropha curcas]
20 Hb_001716_040 0.0973698511 - - ribonuclease p/mrp subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_010863_010 Hb_010863_010 Hb_000614_240 Hb_000614_240 Hb_010863_010--Hb_000614_240 Hb_000120_080 Hb_000120_080 Hb_010863_010--Hb_000120_080 Hb_004787_050 Hb_004787_050 Hb_010863_010--Hb_004787_050 Hb_005634_010 Hb_005634_010 Hb_010863_010--Hb_005634_010 Hb_002471_090 Hb_002471_090 Hb_010863_010--Hb_002471_090 Hb_002456_010 Hb_002456_010 Hb_010863_010--Hb_002456_010 Hb_001999_310 Hb_001999_310 Hb_000614_240--Hb_001999_310 Hb_010142_020 Hb_010142_020 Hb_000614_240--Hb_010142_020 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000011_060 Hb_000011_060 Hb_000614_240--Hb_000011_060 Hb_000614_240--Hb_002456_010 Hb_000580_120 Hb_000580_120 Hb_000120_080--Hb_000580_120 Hb_000029_140 Hb_000029_140 Hb_000120_080--Hb_000029_140 Hb_000352_310 Hb_000352_310 Hb_000120_080--Hb_000352_310 Hb_000189_550 Hb_000189_550 Hb_000120_080--Hb_000189_550 Hb_000120_080--Hb_000011_060 Hb_003058_260 Hb_003058_260 Hb_004787_050--Hb_003058_260 Hb_001998_240 Hb_001998_240 Hb_004787_050--Hb_001998_240 Hb_002675_130 Hb_002675_130 Hb_004787_050--Hb_002675_130 Hb_007894_110 Hb_007894_110 Hb_004787_050--Hb_007894_110 Hb_003943_110 Hb_003943_110 Hb_004787_050--Hb_003943_110 Hb_001635_120 Hb_001635_120 Hb_004787_050--Hb_001635_120 Hb_000556_120 Hb_000556_120 Hb_005634_010--Hb_000556_120 Hb_000140_290 Hb_000140_290 Hb_005634_010--Hb_000140_290 Hb_000329_060 Hb_000329_060 Hb_005634_010--Hb_000329_060 Hb_005634_010--Hb_000011_060 Hb_000836_460 Hb_000836_460 Hb_005634_010--Hb_000836_460 Hb_003544_060 Hb_003544_060 Hb_005634_010--Hb_003544_060 Hb_000521_240 Hb_000521_240 Hb_002471_090--Hb_000521_240 Hb_189216_010 Hb_189216_010 Hb_002471_090--Hb_189216_010 Hb_001635_190 Hb_001635_190 Hb_002471_090--Hb_001635_190 Hb_000778_010 Hb_000778_010 Hb_002471_090--Hb_000778_010 Hb_011218_090 Hb_011218_090 Hb_002471_090--Hb_011218_090 Hb_020178_040 Hb_020178_040 Hb_002471_090--Hb_020178_040 Hb_002456_010--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_002456_010--Hb_001876_050 Hb_004324_130 Hb_004324_130 Hb_002456_010--Hb_004324_130 Hb_002456_010--Hb_003544_060 Hb_000920_300 Hb_000920_300 Hb_002456_010--Hb_000920_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44676 4.0073 3.178 4.06386 1.87031 2.25653
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.08858 2.94893 5.05959 6.7392 4.25064

CAGE analysis