Hb_010863_050

Information

Type -
Description -
Location Contig10863: 34352-37039
Sequence    

Annotation

kegg
ID rcu:RCOM_0501140
description OTU domain-containing protein 6B, putative
nr
ID XP_002526909.1
description OTU domain-containing protein 6B, putative [Ricinus communis]
swissprot
ID Q7ZV00
description OTU domain-containing protein 6B OS=Danio rerio GN=otud6b PE=2 SV=1
trembl
ID B9SLP0
description OTU domain-containing protein 6B, putative OS=Ricinus communis GN=RCOM_0501140 PE=4 SV=1
Gene Ontology
ID GO:0005829
description otu domain-containing protein 6b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02617: 34341-36158 , PASA_asmbl_02618: 36704-36953
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010863_050 0.0 - - OTU domain-containing protein 6B, putative [Ricinus communis]
2 Hb_012150_030 0.0557195508 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
3 Hb_004452_120 0.058684384 - - PREDICTED: uncharacterized protein LOC105639574 [Jatropha curcas]
4 Hb_000304_070 0.0657318947 - - non-canonical ubiquitin conjugating enzyme, putative [Ricinus communis]
5 Hb_000212_230 0.0696166655 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
6 Hb_002675_250 0.0701447799 - - aspartate aminotransferase, putative [Ricinus communis]
7 Hb_035273_020 0.0707042277 - - PREDICTED: amidase 1-like isoform X1 [Jatropha curcas]
8 Hb_000529_180 0.0719822048 - - PREDICTED: mechanosensitive ion channel protein 2, chloroplastic [Jatropha curcas]
9 Hb_000364_050 0.0726245043 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
10 Hb_003053_110 0.0745741067 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
11 Hb_000078_140 0.074614843 - - PREDICTED: WD repeat-containing protein 11 [Jatropha curcas]
12 Hb_008304_020 0.0748266831 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
13 Hb_021374_030 0.0748629847 - - hypothetical protein RCOM_0351490 [Ricinus communis]
14 Hb_005260_030 0.0751389312 - - PREDICTED: uncharacterized protein LOC105633782 [Jatropha curcas]
15 Hb_073973_090 0.0777626475 - - Aminotransferase ybdL, putative [Ricinus communis]
16 Hb_003098_070 0.0790878693 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
17 Hb_000035_090 0.0799085952 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
18 Hb_000046_540 0.0806019739 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 34-like [Populus euphratica]
19 Hb_000212_440 0.0806321491 - - PREDICTED: riboflavin biosynthesis protein PYRR, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_006189_020 0.0809545251 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]

Gene co-expression network

sample Hb_010863_050 Hb_010863_050 Hb_012150_030 Hb_012150_030 Hb_010863_050--Hb_012150_030 Hb_004452_120 Hb_004452_120 Hb_010863_050--Hb_004452_120 Hb_000304_070 Hb_000304_070 Hb_010863_050--Hb_000304_070 Hb_000212_230 Hb_000212_230 Hb_010863_050--Hb_000212_230 Hb_002675_250 Hb_002675_250 Hb_010863_050--Hb_002675_250 Hb_035273_020 Hb_035273_020 Hb_010863_050--Hb_035273_020 Hb_003053_110 Hb_003053_110 Hb_012150_030--Hb_003053_110 Hb_012150_030--Hb_004452_120 Hb_134849_010 Hb_134849_010 Hb_012150_030--Hb_134849_010 Hb_048093_010 Hb_048093_010 Hb_012150_030--Hb_048093_010 Hb_000941_100 Hb_000941_100 Hb_012150_030--Hb_000941_100 Hb_133702_010 Hb_133702_010 Hb_004452_120--Hb_133702_010 Hb_000364_050 Hb_000364_050 Hb_004452_120--Hb_000364_050 Hb_000061_180 Hb_000061_180 Hb_004452_120--Hb_000061_180 Hb_004452_120--Hb_035273_020 Hb_001623_270 Hb_001623_270 Hb_000304_070--Hb_001623_270 Hb_001824_080 Hb_001824_080 Hb_000304_070--Hb_001824_080 Hb_005588_080 Hb_005588_080 Hb_000304_070--Hb_005588_080 Hb_000254_100 Hb_000254_100 Hb_000304_070--Hb_000254_100 Hb_000207_300 Hb_000207_300 Hb_000304_070--Hb_000207_300 Hb_003581_200 Hb_003581_200 Hb_000212_230--Hb_003581_200 Hb_000016_210 Hb_000016_210 Hb_000212_230--Hb_000016_210 Hb_000212_230--Hb_005588_080 Hb_006913_020 Hb_006913_020 Hb_000212_230--Hb_006913_020 Hb_000521_250 Hb_000521_250 Hb_000212_230--Hb_000521_250 Hb_000529_180 Hb_000529_180 Hb_002675_250--Hb_000529_180 Hb_002684_020 Hb_002684_020 Hb_002675_250--Hb_002684_020 Hb_002006_150 Hb_002006_150 Hb_002675_250--Hb_002006_150 Hb_004324_360 Hb_004324_360 Hb_002675_250--Hb_004324_360 Hb_001488_020 Hb_001488_020 Hb_002675_250--Hb_001488_020 Hb_000212_440 Hb_000212_440 Hb_035273_020--Hb_000212_440 Hb_001195_400 Hb_001195_400 Hb_035273_020--Hb_001195_400 Hb_004846_220 Hb_004846_220 Hb_035273_020--Hb_004846_220 Hb_041290_020 Hb_041290_020 Hb_035273_020--Hb_041290_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.21682 11.1729 23.0788 15.4242 9.89477 8.3954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5147 11.9096 10.4151 15.5243 26.2002

CAGE analysis