Hb_010863_080

Information

Type -
Description -
Location Contig10863: 58238-60789
Sequence    

Annotation

kegg
ID vvi:100242612
description membrane-anchored ubiquitin-fold protein 3
nr
ID XP_012082672.1
description PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
swissprot
ID Q6Z8K4
description Membrane-anchored ubiquitin-fold protein 3 OS=Oryza sativa subsp. japonica GN=MUB3 PE=3 SV=1
trembl
ID D7TP35
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0104g01380 PE=4 SV=1
Gene Ontology
ID GO:0005515
description membrane-anchored ubiquitin-fold protein 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02620: 58506-58726 , PASA_asmbl_02621: 59701-60234
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010863_080 0.0 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3-like [Jatropha curcas]
2 Hb_003297_030 0.0692996768 - - PREDICTED: uncharacterized protein LOC105640530 [Jatropha curcas]
3 Hb_000417_180 0.0774877505 - - 60S ribosomal protein L11, putative [Ricinus communis]
4 Hb_000155_190 0.0803292058 - - conserved hypothetical protein [Ricinus communis]
5 Hb_168707_030 0.0832592099 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
6 Hb_000179_210 0.0843464255 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
7 Hb_004195_160 0.0873229202 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
8 Hb_000186_240 0.0874299705 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
9 Hb_000622_310 0.0887058244 - - PREDICTED: BON1-associated protein 2 [Jatropha curcas]
10 Hb_182026_020 0.0899651861 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
11 Hb_000056_100 0.0913060951 - - PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]
12 Hb_000754_060 0.0947553614 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
13 Hb_011918_080 0.0960736684 - - PREDICTED: probable serine/threonine protein kinase IREH1 isoform X2 [Jatropha curcas]
14 Hb_098993_010 0.0963362237 - - PREDICTED: chaperone protein dnaJ 72 isoform X2 [Jatropha curcas]
15 Hb_000017_120 0.0970005707 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]
16 Hb_007575_040 0.0970731553 transcription factor TF Family: bZIP PREDICTED: transcription factor VIP1-like [Jatropha curcas]
17 Hb_000057_040 0.0973900132 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
18 Hb_000120_050 0.0977992578 - - PREDICTED: protein ELF4-LIKE 1 [Jatropha curcas]
19 Hb_000120_950 0.0982896309 - - PREDICTED: protein GRIP [Jatropha curcas]
20 Hb_001030_120 0.0984063406 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_010863_080 Hb_010863_080 Hb_003297_030 Hb_003297_030 Hb_010863_080--Hb_003297_030 Hb_000417_180 Hb_000417_180 Hb_010863_080--Hb_000417_180 Hb_000155_190 Hb_000155_190 Hb_010863_080--Hb_000155_190 Hb_168707_030 Hb_168707_030 Hb_010863_080--Hb_168707_030 Hb_000179_210 Hb_000179_210 Hb_010863_080--Hb_000179_210 Hb_004195_160 Hb_004195_160 Hb_010863_080--Hb_004195_160 Hb_003609_040 Hb_003609_040 Hb_003297_030--Hb_003609_040 Hb_001635_100 Hb_001635_100 Hb_003297_030--Hb_001635_100 Hb_098993_010 Hb_098993_010 Hb_003297_030--Hb_098993_010 Hb_003297_030--Hb_000179_210 Hb_000030_010 Hb_000030_010 Hb_003297_030--Hb_000030_010 Hb_000017_120 Hb_000017_120 Hb_000417_180--Hb_000017_120 Hb_000107_390 Hb_000107_390 Hb_000417_180--Hb_000107_390 Hb_005527_050 Hb_005527_050 Hb_000417_180--Hb_005527_050 Hb_000417_180--Hb_003297_030 Hb_007426_230 Hb_007426_230 Hb_000417_180--Hb_007426_230 Hb_000155_190--Hb_004195_160 Hb_002375_020 Hb_002375_020 Hb_000155_190--Hb_002375_020 Hb_000224_170 Hb_000224_170 Hb_000155_190--Hb_000224_170 Hb_002553_020 Hb_002553_020 Hb_000155_190--Hb_002553_020 Hb_002027_260 Hb_002027_260 Hb_000155_190--Hb_002027_260 Hb_000057_040 Hb_000057_040 Hb_168707_030--Hb_000057_040 Hb_003642_060 Hb_003642_060 Hb_168707_030--Hb_003642_060 Hb_001006_170 Hb_001006_170 Hb_168707_030--Hb_001006_170 Hb_001439_150 Hb_001439_150 Hb_168707_030--Hb_001439_150 Hb_000000_080 Hb_000000_080 Hb_168707_030--Hb_000000_080 Hb_168707_030--Hb_004195_160 Hb_006501_040 Hb_006501_040 Hb_000179_210--Hb_006501_040 Hb_178968_110 Hb_178968_110 Hb_000179_210--Hb_178968_110 Hb_001085_170 Hb_001085_170 Hb_000179_210--Hb_001085_170 Hb_000059_220 Hb_000059_220 Hb_000179_210--Hb_000059_220 Hb_000457_150 Hb_000457_150 Hb_000179_210--Hb_000457_150 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_001030_120 Hb_001030_120 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
112.474 37.945 22.9704 35.205 115.145 93.9681
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.0257 100.914 134.629 36.6163 13.9839

CAGE analysis