Hb_010866_040

Information

Type -
Description -
Location Contig10866: 177946-181779
Sequence    

Annotation

kegg
ID cic:CICLE_v10000826mg
description hypothetical protein
nr
ID XP_012068264.1
description PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
swissprot
ID Q9C6B2
description Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1
trembl
ID A0A067LAX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16062 PE=3 SV=1
Gene Ontology
ID GO:0016020
description metal transporter nramp2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02625: 177959-181752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010866_040 0.0 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
2 Hb_002169_010 0.0785245629 - - PREDICTED: la-related protein 6B [Jatropha curcas]
3 Hb_004310_060 0.083124437 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_000462_150 0.0852418159 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
5 Hb_000457_060 0.0895557703 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
6 Hb_018663_020 0.0910406094 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
7 Hb_000370_030 0.0915982211 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
8 Hb_012760_170 0.0920737114 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
9 Hb_003352_050 0.0954928389 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
10 Hb_005147_110 0.0962304528 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
11 Hb_001969_040 0.0965347837 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
12 Hb_001623_550 0.0969901095 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
13 Hb_000631_150 0.0995535258 - - PREDICTED: RNA polymerase-associated protein LEO1 [Jatropha curcas]
14 Hb_011496_010 0.1007908696 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
15 Hb_042083_070 0.1011181334 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
16 Hb_001366_040 0.1013581184 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
17 Hb_001439_180 0.1019874667 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
18 Hb_005215_080 0.10273039 - - PREDICTED: cyclin-D3-3 [Jatropha curcas]
19 Hb_000120_800 0.1029424425 - - PREDICTED: rab proteins geranylgeranyltransferase component A [Jatropha curcas]
20 Hb_000363_170 0.1030428313 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010866_040 Hb_010866_040 Hb_002169_010 Hb_002169_010 Hb_010866_040--Hb_002169_010 Hb_004310_060 Hb_004310_060 Hb_010866_040--Hb_004310_060 Hb_000462_150 Hb_000462_150 Hb_010866_040--Hb_000462_150 Hb_000457_060 Hb_000457_060 Hb_010866_040--Hb_000457_060 Hb_018663_020 Hb_018663_020 Hb_010866_040--Hb_018663_020 Hb_000370_030 Hb_000370_030 Hb_010866_040--Hb_000370_030 Hb_029281_010 Hb_029281_010 Hb_002169_010--Hb_029281_010 Hb_011496_010 Hb_011496_010 Hb_002169_010--Hb_011496_010 Hb_160818_010 Hb_160818_010 Hb_002169_010--Hb_160818_010 Hb_002169_010--Hb_000462_150 Hb_002377_050 Hb_002377_050 Hb_002169_010--Hb_002377_050 Hb_002818_040 Hb_002818_040 Hb_002169_010--Hb_002818_040 Hb_005147_110 Hb_005147_110 Hb_004310_060--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_004310_060--Hb_000300_280 Hb_008725_250 Hb_008725_250 Hb_004310_060--Hb_008725_250 Hb_000879_140 Hb_000879_140 Hb_004310_060--Hb_000879_140 Hb_005914_230 Hb_005914_230 Hb_004310_060--Hb_005914_230 Hb_004310_060--Hb_018663_020 Hb_003384_030 Hb_003384_030 Hb_000462_150--Hb_003384_030 Hb_001969_040 Hb_001969_040 Hb_000462_150--Hb_001969_040 Hb_000462_150--Hb_002818_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000001_180 Hb_000001_180 Hb_000462_150--Hb_000001_180 Hb_000335_010 Hb_000335_010 Hb_000457_060--Hb_000335_010 Hb_004881_050 Hb_004881_050 Hb_000457_060--Hb_004881_050 Hb_000457_060--Hb_000370_030 Hb_004608_020 Hb_004608_020 Hb_000457_060--Hb_004608_020 Hb_000789_080 Hb_000789_080 Hb_000457_060--Hb_000789_080 Hb_000631_150 Hb_000631_150 Hb_000457_060--Hb_000631_150 Hb_018663_020--Hb_005914_230 Hb_018663_020--Hb_003384_030 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050 Hb_000184_130 Hb_000184_130 Hb_000370_030--Hb_000184_130 Hb_000370_030--Hb_000300_280 Hb_000370_030--Hb_004310_060 Hb_000568_040 Hb_000568_040 Hb_000370_030--Hb_000568_040 Hb_000316_030 Hb_000316_030 Hb_000370_030--Hb_000316_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.9143 10.7268 4.23251 7.11402 37.925 46.2864
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.6872 10.9909 24.2968 16.4898 5.64271

CAGE analysis