Hb_010874_040

Information

Type -
Description -
Location Contig10874: 39865-43093
Sequence    

Annotation

kegg
ID rcu:RCOM_1333850
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012075474.1
description PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g13880 [Jatropha curcas]
swissprot
ID Q9LRV9
description Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1
trembl
ID B9S753
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1333850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010874_040 0.0 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g13880 [Jatropha curcas]
2 Hb_004228_020 0.1150561778 - - hypothetical protein JCGZ_21866 [Jatropha curcas]
3 Hb_009898_010 0.1242061204 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105645502 [Jatropha curcas]
4 Hb_001268_380 0.1243722284 - - PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Jatropha curcas]
5 Hb_005486_030 0.1271730101 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
6 Hb_011716_030 0.1281804748 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Populus euphratica]
7 Hb_002780_010 0.1327165987 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
8 Hb_000189_110 0.1331211542 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04750, mitochondrial [Jatropha curcas]
9 Hb_000032_470 0.1339551628 - - PREDICTED: uncharacterized protein LOC103415826 [Malus domestica]
10 Hb_000318_390 0.1361618334 - - PREDICTED: uncharacterized protein LOC105631693 isoform X1 [Jatropha curcas]
11 Hb_000321_150 0.1361940593 - - PREDICTED: uncharacterized protein LOC105645596 isoform X1 [Jatropha curcas]
12 Hb_001967_030 0.1365408807 - - PREDICTED: uncharacterized protein LOC105633557 [Jatropha curcas]
13 Hb_000540_060 0.1395911242 - - PREDICTED: uncharacterized protein LOC105628177 [Jatropha curcas]
14 Hb_000890_050 0.1410389606 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
15 Hb_000015_050 0.1419870526 - - hypothetical protein JCGZ_01495 [Jatropha curcas]
16 Hb_007575_080 0.1422338569 - - PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
17 Hb_000046_580 0.1422557818 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
18 Hb_002316_160 0.1445043995 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640422 [Jatropha curcas]
19 Hb_001821_130 0.1446235089 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
20 Hb_014267_010 0.1448596564 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010874_040 Hb_010874_040 Hb_004228_020 Hb_004228_020 Hb_010874_040--Hb_004228_020 Hb_009898_010 Hb_009898_010 Hb_010874_040--Hb_009898_010 Hb_001268_380 Hb_001268_380 Hb_010874_040--Hb_001268_380 Hb_005486_030 Hb_005486_030 Hb_010874_040--Hb_005486_030 Hb_011716_030 Hb_011716_030 Hb_010874_040--Hb_011716_030 Hb_002780_010 Hb_002780_010 Hb_010874_040--Hb_002780_010 Hb_004228_020--Hb_001268_380 Hb_000321_150 Hb_000321_150 Hb_004228_020--Hb_000321_150 Hb_001967_030 Hb_001967_030 Hb_004228_020--Hb_001967_030 Hb_000977_120 Hb_000977_120 Hb_004228_020--Hb_000977_120 Hb_005539_090 Hb_005539_090 Hb_004228_020--Hb_005539_090 Hb_006117_080 Hb_006117_080 Hb_004228_020--Hb_006117_080 Hb_009767_080 Hb_009767_080 Hb_009898_010--Hb_009767_080 Hb_009898_010--Hb_002780_010 Hb_002311_100 Hb_002311_100 Hb_009898_010--Hb_002311_100 Hb_002316_160 Hb_002316_160 Hb_009898_010--Hb_002316_160 Hb_009898_010--Hb_005486_030 Hb_005656_040 Hb_005656_040 Hb_009898_010--Hb_005656_040 Hb_001268_380--Hb_009767_080 Hb_000890_050 Hb_000890_050 Hb_001268_380--Hb_000890_050 Hb_001268_380--Hb_002780_010 Hb_001268_380--Hb_005486_030 Hb_002007_160 Hb_002007_160 Hb_001268_380--Hb_002007_160 Hb_000130_490 Hb_000130_490 Hb_005486_030--Hb_000130_490 Hb_000672_040 Hb_000672_040 Hb_005486_030--Hb_000672_040 Hb_005486_030--Hb_002316_160 Hb_005486_030--Hb_009767_080 Hb_008053_040 Hb_008053_040 Hb_005486_030--Hb_008053_040 Hb_000204_210 Hb_000204_210 Hb_011716_030--Hb_000204_210 Hb_000107_420 Hb_000107_420 Hb_011716_030--Hb_000107_420 Hb_168697_010 Hb_168697_010 Hb_011716_030--Hb_168697_010 Hb_000270_670 Hb_000270_670 Hb_011716_030--Hb_000270_670 Hb_009486_200 Hb_009486_200 Hb_011716_030--Hb_009486_200 Hb_000206_240 Hb_000206_240 Hb_011716_030--Hb_000206_240 Hb_002780_010--Hb_002007_160 Hb_002780_010--Hb_009767_080 Hb_002780_010--Hb_000321_150 Hb_000260_070 Hb_000260_070 Hb_002780_010--Hb_000260_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.131643 0.578534 0.111111 0.100454 0.312347 0.436168
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.156836 0.1097 0.470666 0.212347 0.408184

CAGE analysis