Hb_010883_050

Information

Type -
Description -
Location Contig10883: 50742-59523
Sequence    

Annotation

kegg
ID rcu:RCOM_1032520
description Oxysterol-binding protein, putative
nr
ID XP_012078162.1
description PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
swissprot
ID Q8L751
description Oxysterol-binding protein-related protein 1C OS=Arabidopsis thaliana GN=ORP1C PE=2 SV=1
trembl
ID A0A067KCP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12045 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02651: 50706-59386 , PASA_asmbl_02652: 57942-58064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_050 0.0 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
2 Hb_000436_130 0.0616293428 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
3 Hb_006420_080 0.0660237288 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_002007_210 0.0741834581 - - PREDICTED: sucrose nonfermenting 4-like protein isoform X2 [Jatropha curcas]
5 Hb_000336_240 0.075125105 transcription factor TF Family: mTERF LOC100285792 [Zea mays]
6 Hb_076233_040 0.0781575329 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
7 Hb_003697_040 0.0793588395 - - hypothetical protein B456_005G209600 [Gossypium raimondii]
8 Hb_000703_350 0.0795025172 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
9 Hb_004889_010 0.082493908 - - Vacuolar protein sorting-associated protein-like protein [Medicago truncatula]
10 Hb_001776_160 0.0846072406 - - 20S proteasome alpha subunit G1 [Theobroma cacao]
11 Hb_000805_240 0.0849060591 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
12 Hb_007009_010 0.084993981 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675 [Populus euphratica]
13 Hb_000103_320 0.0858637656 - - Stem-specific protein TSJT1, putative [Ricinus communis]
14 Hb_004899_370 0.0864642574 - - hypothetical protein CICLE_v10009013mg [Citrus clementina]
15 Hb_009615_070 0.0866161767 - - type X protein phosphatase-II [Populus trichocarpa]
16 Hb_007904_260 0.0866276627 - - PREDICTED: uncharacterized protein LOC105644715 [Jatropha curcas]
17 Hb_006831_120 0.08770744 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
18 Hb_015778_010 0.0886162667 - - PREDICTED: AMSH-like ubiquitin thioesterase 1 [Jatropha curcas]
19 Hb_003605_090 0.0891380383 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105632419 [Jatropha curcas]
20 Hb_011512_040 0.0891451572 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]

Gene co-expression network

sample Hb_010883_050 Hb_010883_050 Hb_000436_130 Hb_000436_130 Hb_010883_050--Hb_000436_130 Hb_006420_080 Hb_006420_080 Hb_010883_050--Hb_006420_080 Hb_002007_210 Hb_002007_210 Hb_010883_050--Hb_002007_210 Hb_000336_240 Hb_000336_240 Hb_010883_050--Hb_000336_240 Hb_076233_040 Hb_076233_040 Hb_010883_050--Hb_076233_040 Hb_003697_040 Hb_003697_040 Hb_010883_050--Hb_003697_040 Hb_009339_030 Hb_009339_030 Hb_000436_130--Hb_009339_030 Hb_000733_180 Hb_000733_180 Hb_000436_130--Hb_000733_180 Hb_000436_130--Hb_003697_040 Hb_001013_030 Hb_001013_030 Hb_000436_130--Hb_001013_030 Hb_003053_020 Hb_003053_020 Hb_000436_130--Hb_003053_020 Hb_015778_010 Hb_015778_010 Hb_006420_080--Hb_015778_010 Hb_001902_140 Hb_001902_140 Hb_006420_080--Hb_001902_140 Hb_000982_080 Hb_000982_080 Hb_006420_080--Hb_000982_080 Hb_001489_080 Hb_001489_080 Hb_006420_080--Hb_001489_080 Hb_006420_080--Hb_003697_040 Hb_002007_210--Hb_015778_010 Hb_004837_160 Hb_004837_160 Hb_002007_210--Hb_004837_160 Hb_152784_010 Hb_152784_010 Hb_002007_210--Hb_152784_010 Hb_003349_090 Hb_003349_090 Hb_002007_210--Hb_003349_090 Hb_009615_070 Hb_009615_070 Hb_002007_210--Hb_009615_070 Hb_007009_010 Hb_007009_010 Hb_000336_240--Hb_007009_010 Hb_004889_010 Hb_004889_010 Hb_000336_240--Hb_004889_010 Hb_000363_360 Hb_000363_360 Hb_000336_240--Hb_000363_360 Hb_000336_240--Hb_002007_210 Hb_000638_170 Hb_000638_170 Hb_000336_240--Hb_000638_170 Hb_008841_020 Hb_008841_020 Hb_076233_040--Hb_008841_020 Hb_003126_070 Hb_003126_070 Hb_076233_040--Hb_003126_070 Hb_000329_210 Hb_000329_210 Hb_076233_040--Hb_000329_210 Hb_076233_040--Hb_006420_080 Hb_005054_210 Hb_005054_210 Hb_076233_040--Hb_005054_210 Hb_000477_060 Hb_000477_060 Hb_003697_040--Hb_000477_060 Hb_003605_090 Hb_003605_090 Hb_003697_040--Hb_003605_090 Hb_003697_040--Hb_003053_020 Hb_004934_100 Hb_004934_100 Hb_003697_040--Hb_004934_100 Hb_003697_040--Hb_004889_010 Hb_000783_020 Hb_000783_020 Hb_003697_040--Hb_000783_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.32364 4.49693 6.66933 11.4887 4.78946 6.14645
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.1917 16.5461 15.3171 6.79596 9.24786

CAGE analysis