Hb_010883_070

Information

Type -
Description -
Location Contig10883: 77279-78816
Sequence    

Annotation

kegg
ID rcu:RCOM_1032390
description biotin protein ligase, putative (EC:6.3.4.15)
nr
ID XP_012078166.1
description PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
swissprot
ID F4I4W2
description Biotin--protein ligase 2 OS=Arabidopsis thaliana GN=HCS2 PE=2 SV=1
trembl
ID A0A067KKH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12047 PE=4 SV=1
Gene Ontology
ID GO:0018271
description holocarboxylase synthetase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_070 0.0 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
2 Hb_002272_090 0.1745159346 - - RING/U-box superfamily protein [Theobroma cacao]
3 Hb_003702_080 0.1790040536 - - cysteine protease, putative [Ricinus communis]
4 Hb_000367_030 0.1809352657 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
5 Hb_008725_040 0.1822008487 - - PREDICTED: uncharacterized protein At4g29660 [Nelumbo nucifera]
6 Hb_004333_030 0.1871614192 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
7 Hb_103118_020 0.1951224363 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
8 Hb_006718_010 0.1977314836 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
9 Hb_075359_010 0.1993955859 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
10 Hb_005245_070 0.201429926 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
11 Hb_002843_210 0.2045081437 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
12 Hb_005914_200 0.2079654375 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
13 Hb_001269_490 0.2087726768 - - conserved hypothetical protein [Ricinus communis]
14 Hb_008748_020 0.2088443739 - - hypothetical protein B456_005G210700 [Gossypium raimondii]
15 Hb_152021_010 0.2112320312 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
16 Hb_030565_040 0.2114792108 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
17 Hb_006541_020 0.2119256377 - - unknown [Lotus japonicus]
18 Hb_000001_070 0.2123511399 - - -
19 Hb_004429_110 0.2153209416 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
20 Hb_009372_030 0.2167971785 - - 50S ribosomal protein L6, putative [Ricinus communis]

Gene co-expression network

sample Hb_010883_070 Hb_010883_070 Hb_002272_090 Hb_002272_090 Hb_010883_070--Hb_002272_090 Hb_003702_080 Hb_003702_080 Hb_010883_070--Hb_003702_080 Hb_000367_030 Hb_000367_030 Hb_010883_070--Hb_000367_030 Hb_008725_040 Hb_008725_040 Hb_010883_070--Hb_008725_040 Hb_004333_030 Hb_004333_030 Hb_010883_070--Hb_004333_030 Hb_103118_020 Hb_103118_020 Hb_010883_070--Hb_103118_020 Hb_145084_010 Hb_145084_010 Hb_002272_090--Hb_145084_010 Hb_000329_250 Hb_000329_250 Hb_002272_090--Hb_000329_250 Hb_008566_020 Hb_008566_020 Hb_002272_090--Hb_008566_020 Hb_007181_070 Hb_007181_070 Hb_002272_090--Hb_007181_070 Hb_000742_110 Hb_000742_110 Hb_002272_090--Hb_000742_110 Hb_152021_010 Hb_152021_010 Hb_003702_080--Hb_152021_010 Hb_003702_080--Hb_004333_030 Hb_000106_100 Hb_000106_100 Hb_003702_080--Hb_000106_100 Hb_000896_120 Hb_000896_120 Hb_003702_080--Hb_000896_120 Hb_001377_380 Hb_001377_380 Hb_003702_080--Hb_001377_380 Hb_000215_180 Hb_000215_180 Hb_003702_080--Hb_000215_180 Hb_006718_010 Hb_006718_010 Hb_000367_030--Hb_006718_010 Hb_006541_020 Hb_006541_020 Hb_000367_030--Hb_006541_020 Hb_002843_210 Hb_002843_210 Hb_000367_030--Hb_002843_210 Hb_005245_070 Hb_005245_070 Hb_000367_030--Hb_005245_070 Hb_000025_240 Hb_000025_240 Hb_000367_030--Hb_000025_240 Hb_007520_060 Hb_007520_060 Hb_000367_030--Hb_007520_060 Hb_008725_040--Hb_103118_020 Hb_003913_080 Hb_003913_080 Hb_008725_040--Hb_003913_080 Hb_116420_020 Hb_116420_020 Hb_008725_040--Hb_116420_020 Hb_004208_130 Hb_004208_130 Hb_008725_040--Hb_004208_130 Hb_000732_210 Hb_000732_210 Hb_008725_040--Hb_000732_210 Hb_030565_040 Hb_030565_040 Hb_004333_030--Hb_030565_040 Hb_001623_430 Hb_001623_430 Hb_004333_030--Hb_001623_430 Hb_000318_490 Hb_000318_490 Hb_004333_030--Hb_000318_490 Hb_004333_030--Hb_000896_120 Hb_187083_010 Hb_187083_010 Hb_004333_030--Hb_187083_010 Hb_004333_030--Hb_000106_100 Hb_005914_200 Hb_005914_200 Hb_103118_020--Hb_005914_200 Hb_000707_020 Hb_000707_020 Hb_103118_020--Hb_000707_020 Hb_002518_290 Hb_002518_290 Hb_103118_020--Hb_002518_290 Hb_001307_210 Hb_001307_210 Hb_103118_020--Hb_001307_210 Hb_008748_020 Hb_008748_020 Hb_103118_020--Hb_008748_020 Hb_011377_020 Hb_011377_020 Hb_103118_020--Hb_011377_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.143239 0.0341841 0.611882 0.124754 0.431721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07863 2.00376 0.811068 0.757647 0

CAGE analysis