Hb_010883_080

Information

Type transcription factor
Description TF Family: SET
Location Contig10883: 78558-83824
Sequence    

Annotation

kegg
ID rcu:RCOM_1032380
description protein with unknown function
nr
ID XP_012078167.1
description PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
swissprot
ID Q7XJS0
description Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2
trembl
ID A0A067K971
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12048 PE=4 SV=1
Gene Ontology
ID GO:0046872
description histone-lysine n-methyltransferase ashr1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02655: 77314-77698 , PASA_asmbl_02656: 78498-79460 , PASA_asmbl_02657: 79725-81705 , PASA_asmbl_02658: 80388-81250 , PASA_asmbl_02659: 81815-82185 , PASA_asmbl_02660: 82207-83568
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_080 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
2 Hb_000116_570 0.0749851439 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5-like [Jatropha curcas]
3 Hb_001473_080 0.0920914085 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]
4 Hb_000016_280 0.0924331618 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
5 Hb_000685_080 0.0943832962 - - protein binding protein, putative [Ricinus communis]
6 Hb_001922_130 0.0975169988 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
7 Hb_000186_260 0.0988545659 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
8 Hb_002805_170 0.1005792798 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
9 Hb_009646_050 0.1055596885 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000504_160 0.108022222 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
11 Hb_000116_460 0.108314535 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]
12 Hb_001946_240 0.1093475405 - - PREDICTED: chaperone protein dnaJ 49-like [Jatropha curcas]
13 Hb_000281_010 0.109781445 - - hypothetical protein JCGZ_16194 [Jatropha curcas]
14 Hb_002612_010 0.110608188 - - hypothetical protein JCGZ_19269 [Jatropha curcas]
15 Hb_101151_020 0.1137264794 - - DNA binding protein, putative [Ricinus communis]
16 Hb_004017_040 0.1148820809 - - kinetochore protein nuf2, putative [Ricinus communis]
17 Hb_000120_570 0.1174320624 - - Mlo protein [Hevea brasiliensis]
18 Hb_001396_290 0.1180731727 - - hypothetical protein B456_005G166600 [Gossypium raimondii]
19 Hb_001703_130 0.1181791335 - - PREDICTED: vesicle transport v-SNARE 12-like [Populus euphratica]
20 Hb_001522_010 0.1226772453 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010883_080 Hb_010883_080 Hb_000116_570 Hb_000116_570 Hb_010883_080--Hb_000116_570 Hb_001473_080 Hb_001473_080 Hb_010883_080--Hb_001473_080 Hb_000016_280 Hb_000016_280 Hb_010883_080--Hb_000016_280 Hb_000685_080 Hb_000685_080 Hb_010883_080--Hb_000685_080 Hb_001922_130 Hb_001922_130 Hb_010883_080--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_010883_080--Hb_000186_260 Hb_000116_570--Hb_000016_280 Hb_000093_130 Hb_000093_130 Hb_000116_570--Hb_000093_130 Hb_000116_570--Hb_000685_080 Hb_001227_110 Hb_001227_110 Hb_000116_570--Hb_001227_110 Hb_009646_050 Hb_009646_050 Hb_000116_570--Hb_009646_050 Hb_001473_080--Hb_001922_130 Hb_001946_240 Hb_001946_240 Hb_001473_080--Hb_001946_240 Hb_003125_060 Hb_003125_060 Hb_001473_080--Hb_003125_060 Hb_000120_570 Hb_000120_570 Hb_001473_080--Hb_000120_570 Hb_002675_040 Hb_002675_040 Hb_001473_080--Hb_002675_040 Hb_101151_020 Hb_101151_020 Hb_000016_280--Hb_101151_020 Hb_000016_280--Hb_001227_110 Hb_000016_280--Hb_000685_080 Hb_000016_280--Hb_003125_060 Hb_000685_080--Hb_003125_060 Hb_000685_080--Hb_009646_050 Hb_005399_020 Hb_005399_020 Hb_000685_080--Hb_005399_020 Hb_002977_010 Hb_002977_010 Hb_000685_080--Hb_002977_010 Hb_002133_030 Hb_002133_030 Hb_000685_080--Hb_002133_030 Hb_001922_130--Hb_000120_570 Hb_004374_150 Hb_004374_150 Hb_001922_130--Hb_004374_150 Hb_001922_130--Hb_000116_570 Hb_001922_130--Hb_000186_260 Hb_000504_160 Hb_000504_160 Hb_000186_260--Hb_000504_160 Hb_002659_060 Hb_002659_060 Hb_000186_260--Hb_002659_060 Hb_000331_160 Hb_000331_160 Hb_000186_260--Hb_000331_160 Hb_000186_260--Hb_001473_080 Hb_001396_290 Hb_001396_290 Hb_000186_260--Hb_001396_290 Hb_004017_040 Hb_004017_040 Hb_000186_260--Hb_004017_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.9172 28.8025 12.2577 5.71444 43.6878 31.2948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.2074 4.77501 3.50144 7.44065 3.47698

CAGE analysis