Hb_010883_100

Information

Type transcription factor
Description TF Family: C2H2
Location Contig10883: 94476-96082
Sequence    

Annotation

kegg
ID pop:POPTR_0005s16070g
description POPTRDRAFT_209759; hypothetical protein
nr
ID XP_012078173.1
description PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K976
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12053 PE=4 SV=1
Gene Ontology
ID GO:0003950
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_100 0.0 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105638892 [Jatropha curcas]
2 Hb_074197_010 0.2039810351 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
3 Hb_005396_040 0.2255541156 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_003207_110 0.2256469477 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]
5 Hb_001959_040 0.2258411593 - - PREDICTED: beta-amylase 1, chloroplastic [Jatropha curcas]
6 Hb_005321_030 0.2320108455 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4 [Jatropha curcas]
7 Hb_026428_010 0.2365207444 - - copper transport protein ATOX1 [Hevea brasiliensis]
8 Hb_001373_150 0.2398318551 - - PREDICTED: uncharacterized protein LOC105628778 [Jatropha curcas]
9 Hb_000080_220 0.2411968711 - - ankyrin repeat-containing protein, putative [Ricinus communis]
10 Hb_002471_100 0.2415352121 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
11 Hb_002471_070 0.2443420241 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
12 Hb_001001_030 0.2465164987 - - hypothetical protein POPTR_0014s03230g [Populus trichocarpa]
13 Hb_007336_040 0.2534888114 - - protein binding protein, putative [Ricinus communis]
14 Hb_006570_070 0.2540366181 - - cyclophilin [Hevea brasiliensis]
15 Hb_009493_010 0.2570407029 - - Minor allergen Alt a, putative [Ricinus communis]
16 Hb_101334_010 0.2611561164 - - PREDICTED: protein TIFY 4B isoform X3 [Jatropha curcas]
17 Hb_001587_190 0.261575415 - - PREDICTED: uncharacterized protein LOC105762101 [Gossypium raimondii]
18 Hb_000270_440 0.2654505637 transcription factor TF Family: Orphans hypothetical protein POPTR_0015s08130g [Populus trichocarpa]
19 Hb_000107_410 0.2667412429 - - PREDICTED: expansin-A20 [Jatropha curcas]
20 Hb_002876_030 0.2707972049 - - PREDICTED: 3-ketoacyl-CoA synthase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_010883_100 Hb_010883_100 Hb_074197_010 Hb_074197_010 Hb_010883_100--Hb_074197_010 Hb_005396_040 Hb_005396_040 Hb_010883_100--Hb_005396_040 Hb_003207_110 Hb_003207_110 Hb_010883_100--Hb_003207_110 Hb_001959_040 Hb_001959_040 Hb_010883_100--Hb_001959_040 Hb_005321_030 Hb_005321_030 Hb_010883_100--Hb_005321_030 Hb_026428_010 Hb_026428_010 Hb_010883_100--Hb_026428_010 Hb_002603_130 Hb_002603_130 Hb_074197_010--Hb_002603_130 Hb_005892_060 Hb_005892_060 Hb_074197_010--Hb_005892_060 Hb_019033_010 Hb_019033_010 Hb_074197_010--Hb_019033_010 Hb_002301_290 Hb_002301_290 Hb_074197_010--Hb_002301_290 Hb_074197_010--Hb_026428_010 Hb_002471_100 Hb_002471_100 Hb_074197_010--Hb_002471_100 Hb_023214_010 Hb_023214_010 Hb_005396_040--Hb_023214_010 Hb_124315_040 Hb_124315_040 Hb_005396_040--Hb_124315_040 Hb_005396_040--Hb_003207_110 Hb_002471_070 Hb_002471_070 Hb_005396_040--Hb_002471_070 Hb_002876_030 Hb_002876_030 Hb_005396_040--Hb_002876_030 Hb_012347_010 Hb_012347_010 Hb_005396_040--Hb_012347_010 Hb_003207_110--Hb_002471_070 Hb_000920_150 Hb_000920_150 Hb_003207_110--Hb_000920_150 Hb_003207_110--Hb_023214_010 Hb_003207_110--Hb_002876_030 Hb_001035_040 Hb_001035_040 Hb_003207_110--Hb_001035_040 Hb_000005_330 Hb_000005_330 Hb_001959_040--Hb_000005_330 Hb_000261_440 Hb_000261_440 Hb_001959_040--Hb_000261_440 Hb_001587_190 Hb_001587_190 Hb_001959_040--Hb_001587_190 Hb_004225_180 Hb_004225_180 Hb_001959_040--Hb_004225_180 Hb_022092_120 Hb_022092_120 Hb_001959_040--Hb_022092_120 Hb_001047_120 Hb_001047_120 Hb_001959_040--Hb_001047_120 Hb_000260_450 Hb_000260_450 Hb_005321_030--Hb_000260_450 Hb_001341_130 Hb_001341_130 Hb_005321_030--Hb_001341_130 Hb_055259_010 Hb_055259_010 Hb_005321_030--Hb_055259_010 Hb_010710_020 Hb_010710_020 Hb_005321_030--Hb_010710_020 Hb_005321_030--Hb_026428_010 Hb_000188_130 Hb_000188_130 Hb_005321_030--Hb_000188_130 Hb_000803_050 Hb_000803_050 Hb_026428_010--Hb_000803_050 Hb_026428_010--Hb_001035_040 Hb_007120_070 Hb_007120_070 Hb_026428_010--Hb_007120_070 Hb_000175_610 Hb_000175_610 Hb_026428_010--Hb_000175_610 Hb_026428_010--Hb_000188_130 Hb_000107_070 Hb_000107_070 Hb_026428_010--Hb_000107_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4931 2.85681 0.709871 2.55593 0.638312 1.19702
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.8113 2.24107 2.8988 1.91346 0.460942

CAGE analysis