Hb_010883_150

Information

Type -
Description -
Location Contig10883: 129743-131371
Sequence    

Annotation

kegg
ID rcu:RCOM_0867250
description Ubiquitin-fold modifier 1 precursor, putative
nr
ID XP_002519920.1
description Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
swissprot
ID Q9CA23
description Ubiquitin-fold modifier 1 OS=Arabidopsis thaliana GN=At1g77710 PE=3 SV=1
trembl
ID B9S1Q5
description Ubiquitin-fold modifier 1 OS=Ricinus communis GN=RCOM_0867250 PE=3 SV=1
Gene Ontology
ID GO:0006661
description ubiquitin-fold modifier 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02671: 129636-131397 , PASA_asmbl_02672: 132300-132704 , PASA_asmbl_02673: 132309-132709
cDNA
(Sanger)
(ID:Location)		 002_K16.ab1: 129636-131397 , 044_G09.ab1: 129712-131387

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_150 0.0 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
2 Hb_001584_070 0.07429559 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008847_020 0.074849447 - - 40S ribosomal protein S17C [Hevea brasiliensis]
4 Hb_000526_150 0.0760243091 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
5 Hb_000840_190 0.0784108473 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
6 Hb_002311_320 0.0785184692 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
7 Hb_000061_330 0.0793664955 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
8 Hb_070986_010 0.0811880355 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
9 Hb_000634_050 0.0850723789 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
10 Hb_002571_020 0.0888203882 - - PREDICTED: uncharacterized protein LOC105132457 isoform X12 [Populus euphratica]
11 Hb_003086_100 0.0890440252 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
12 Hb_001269_270 0.0895721928 - - 60S ribosomal protein L27B [Hevea brasiliensis]
13 Hb_000120_750 0.0903777085 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
14 Hb_000045_190 0.0906045371 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
15 Hb_002781_020 0.09083618 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
16 Hb_000317_340 0.0946590281 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000815_260 0.095634596 - - 50S ribosomal protein L32pA [Hevea brasiliensis]
18 Hb_001383_060 0.0960143315 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
19 Hb_000184_050 0.0964011156 - - NOI, putative [Ricinus communis]
20 Hb_003125_150 0.0967088376 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]

Gene co-expression network

sample Hb_010883_150 Hb_010883_150 Hb_001584_070 Hb_001584_070 Hb_010883_150--Hb_001584_070 Hb_008847_020 Hb_008847_020 Hb_010883_150--Hb_008847_020 Hb_000526_150 Hb_000526_150 Hb_010883_150--Hb_000526_150 Hb_000840_190 Hb_000840_190 Hb_010883_150--Hb_000840_190 Hb_002311_320 Hb_002311_320 Hb_010883_150--Hb_002311_320 Hb_000061_330 Hb_000061_330 Hb_010883_150--Hb_000061_330 Hb_000465_060 Hb_000465_060 Hb_001584_070--Hb_000465_060 Hb_000365_380 Hb_000365_380 Hb_001584_070--Hb_000365_380 Hb_001824_070 Hb_001824_070 Hb_001584_070--Hb_001824_070 Hb_012515_010 Hb_012515_010 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060 Hb_002781_020 Hb_002781_020 Hb_008847_020--Hb_002781_020 Hb_000199_070 Hb_000199_070 Hb_008847_020--Hb_000199_070 Hb_000184_050 Hb_000184_050 Hb_008847_020--Hb_000184_050 Hb_000212_470 Hb_000212_470 Hb_008847_020--Hb_000212_470 Hb_008847_020--Hb_000526_150 Hb_001269_270 Hb_001269_270 Hb_000526_150--Hb_001269_270 Hb_001638_260 Hb_001638_260 Hb_000526_150--Hb_001638_260 Hb_009851_100 Hb_009851_100 Hb_000526_150--Hb_009851_100 Hb_000545_150 Hb_000545_150 Hb_000526_150--Hb_000545_150 Hb_000634_050 Hb_000634_050 Hb_000526_150--Hb_000634_050 Hb_001818_020 Hb_001818_020 Hb_000526_150--Hb_001818_020 Hb_008695_040 Hb_008695_040 Hb_000840_190--Hb_008695_040 Hb_046157_020 Hb_046157_020 Hb_000840_190--Hb_046157_020 Hb_001421_060 Hb_001421_060 Hb_000840_190--Hb_001421_060 Hb_001824_010 Hb_001824_010 Hb_000840_190--Hb_001824_010 Hb_000086_550 Hb_000086_550 Hb_000840_190--Hb_000086_550 Hb_000317_340 Hb_000317_340 Hb_002311_320--Hb_000317_340 Hb_003086_100 Hb_003086_100 Hb_002311_320--Hb_003086_100 Hb_000505_140 Hb_000505_140 Hb_002311_320--Hb_000505_140 Hb_002311_320--Hb_000526_150 Hb_002571_020 Hb_002571_020 Hb_002311_320--Hb_002571_020 Hb_005686_110 Hb_005686_110 Hb_000061_330--Hb_005686_110 Hb_011931_050 Hb_011931_050 Hb_000061_330--Hb_011931_050 Hb_000479_180 Hb_000479_180 Hb_000061_330--Hb_000479_180 Hb_000061_330--Hb_001584_070 Hb_000061_330--Hb_000634_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
609.295 219.157 171.778 344.446 490.803 821.569
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1578.81 1625.87 509.294 408.047 119.801

CAGE analysis