Hb_010883_170

Information

Type -
Description -
Location Contig10883: 136685-139260
Sequence    

Annotation

kegg
ID egr:104450480
description auxin transporter-like protein 3
nr
ID XP_012078180.1
description PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
swissprot
ID Q9FEL6
description Auxin transporter-like protein 3 OS=Medicago truncatula GN=LAX3 PE=2 SV=1
trembl
ID A0A067KKI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12057 PE=4 SV=1
Gene Ontology
ID GO:0016021
description auxin transporter-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02674: 136609-139223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_170 0.0 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
2 Hb_000816_140 0.0523015444 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
3 Hb_012653_050 0.063552492 - - hypothetical protein RCOM_0460020 [Ricinus communis]
4 Hb_004202_020 0.0725453662 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002221_060 0.0751738887 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
6 Hb_006922_120 0.0761051923 - - hypothetical protein JCGZ_01146 [Jatropha curcas]
7 Hb_006977_010 0.0774266982 - - unnamed protein product [Vitis vinifera]
8 Hb_000103_450 0.0795518736 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
9 Hb_000483_450 0.0801862922 - - PREDICTED: anthranilate N-benzoyltransferase protein 1 [Jatropha curcas]
10 Hb_000140_320 0.0850321093 - - delta-8 sphingolipid desaturase [Vernicia fordii]
11 Hb_000057_090 0.0857165495 - - hypothetical protein RCOM_1494490 [Ricinus communis]
12 Hb_000103_200 0.0868566999 - - calmodulin binding protein, putative [Ricinus communis]
13 Hb_007113_060 0.0876802488 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
14 Hb_006846_040 0.0884223701 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
15 Hb_004137_040 0.0901494039 - - PREDICTED: serine carboxypeptidase-like 42 [Jatropha curcas]
16 Hb_001956_130 0.0907441069 - - catalytic, putative [Ricinus communis]
17 Hb_004162_200 0.0910252286 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
18 Hb_011618_110 0.0919554561 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020-like [Citrus sinensis]
19 Hb_000230_300 0.0923513364 - - PREDICTED: S-adenosylmethionine decarboxylase proenzyme 4 [Jatropha curcas]
20 Hb_000933_030 0.0935153711 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010883_170 Hb_010883_170 Hb_000816_140 Hb_000816_140 Hb_010883_170--Hb_000816_140 Hb_012653_050 Hb_012653_050 Hb_010883_170--Hb_012653_050 Hb_004202_020 Hb_004202_020 Hb_010883_170--Hb_004202_020 Hb_002221_060 Hb_002221_060 Hb_010883_170--Hb_002221_060 Hb_006922_120 Hb_006922_120 Hb_010883_170--Hb_006922_120 Hb_006977_010 Hb_006977_010 Hb_010883_170--Hb_006977_010 Hb_007113_060 Hb_007113_060 Hb_000816_140--Hb_007113_060 Hb_000816_140--Hb_006922_120 Hb_000816_140--Hb_012653_050 Hb_000815_050 Hb_000815_050 Hb_000816_140--Hb_000815_050 Hb_000057_090 Hb_000057_090 Hb_000816_140--Hb_000057_090 Hb_000103_450 Hb_000103_450 Hb_012653_050--Hb_000103_450 Hb_000483_450 Hb_000483_450 Hb_012653_050--Hb_000483_450 Hb_012653_050--Hb_004202_020 Hb_012653_050--Hb_000815_050 Hb_004202_020--Hb_000483_450 Hb_001047_090 Hb_001047_090 Hb_004202_020--Hb_001047_090 Hb_040852_010 Hb_040852_010 Hb_004202_020--Hb_040852_010 Hb_003894_110 Hb_003894_110 Hb_004202_020--Hb_003894_110 Hb_000392_110 Hb_000392_110 Hb_004202_020--Hb_000392_110 Hb_003376_020 Hb_003376_020 Hb_004202_020--Hb_003376_020 Hb_000003_380 Hb_000003_380 Hb_002221_060--Hb_000003_380 Hb_000230_300 Hb_000230_300 Hb_002221_060--Hb_000230_300 Hb_004137_040 Hb_004137_040 Hb_002221_060--Hb_004137_040 Hb_002221_060--Hb_000483_450 Hb_000103_200 Hb_000103_200 Hb_002221_060--Hb_000103_200 Hb_000928_030 Hb_000928_030 Hb_002221_060--Hb_000928_030 Hb_006922_120--Hb_006977_010 Hb_006922_120--Hb_007113_060 Hb_013749_040 Hb_013749_040 Hb_006922_120--Hb_013749_040 Hb_005440_040 Hb_005440_040 Hb_006922_120--Hb_005440_040 Hb_005295_030 Hb_005295_030 Hb_006977_010--Hb_005295_030 Hb_006977_010--Hb_007113_060 Hb_004162_200 Hb_004162_200 Hb_006977_010--Hb_004162_200 Hb_006977_010--Hb_005440_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.237988 4.21831 8.97819 0.0116085 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0442585 4.28809

CAGE analysis