Hb_010883_210

Information

Type -
Description -
Location Contig10883: 158201-161001
Sequence    

Annotation

kegg
ID mdm:103448104
description selenoprotein K
nr
ID XP_012078185.1
description PREDICTED: selenoprotein K [Jatropha curcas]
swissprot
ID Q4R8M1
description Selenoprotein K OS=Macaca fascicularis GN=SELK PE=3 SV=3
trembl
ID B9RJ57
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1031480 PE=4 SV=1
Gene Ontology
ID GO:0006457
description selenoprotein k

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02680: 158291-161020
cDNA
(Sanger)
(ID:Location)		 001_L17.ab1: 158389-161020 , 005_O02.ab1: 158389-161020 , 009_G18.ab1: 158389-161020 , 018_J10.ab1: 158389-161020 , 018_N22.ab1: 158391-161016 , 022_E24.ab1: 158324-160969 , 024_N23.ab1: 158324-160969 , 026_H19.ab1: 158389-161020 , 027_H13.ab1: 158389-161020 , 040_D08.ab1: 158381-161020 , 043_P21.ab1: 158389-160982 , 045_J17.ab1: 158381-161020 , 048_O18.ab1: 158389-161020 , 051_B16.ab1: 158407-161020 , 051_M02.ab1: 158389-161020 , 053_A19.ab1: 158389-161020

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010883_210 0.0 - - PREDICTED: selenoprotein K [Jatropha curcas]
2 Hb_000768_050 0.0911319838 - - hypothetical protein RCOM_0845740 [Ricinus communis]
3 Hb_003106_070 0.0931292856 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
4 Hb_003688_100 0.0994914612 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
5 Hb_010449_020 0.1010627359 - - PREDICTED: rRNA-processing protein UTP23 homolog [Jatropha curcas]
6 Hb_002918_280 0.1023699101 - - hypothetical protein POPTR_0004s04800g [Populus trichocarpa]
7 Hb_005489_130 0.1030038456 - - calmodulin, putative [Ricinus communis]
8 Hb_004012_010 0.1044836165 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
9 Hb_001514_020 0.1095680101 - - PREDICTED: protein DCL, chloroplastic-like [Jatropha curcas]
10 Hb_000272_100 0.1105773748 - - PREDICTED: uncharacterized protein LOC103949110 [Pyrus x bretschneideri]
11 Hb_002495_070 0.1109368992 - - PREDICTED: uncharacterized protein LOC105634731 [Jatropha curcas]
12 Hb_004204_030 0.1110840458 - - unknown [Populus trichocarpa]
13 Hb_004607_140 0.1113527957 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
14 Hb_000265_150 0.1116994541 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
15 Hb_159558_030 0.1122924805 - - ubiquitin-conjugating enzyme E2 variant 1D [Jatropha curcas]
16 Hb_011537_010 0.1139314559 - - PREDICTED: uncharacterized protein LOC105646226 [Jatropha curcas]
17 Hb_002553_020 0.1139364537 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002400_390 0.1148092569 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
19 Hb_002681_040 0.1148828295 - - PREDICTED: ribosomal RNA-processing protein 8 [Jatropha curcas]
20 Hb_008406_160 0.1158923013 - - PREDICTED: ADP,ATP carrier protein 3, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_010883_210 Hb_010883_210 Hb_000768_050 Hb_000768_050 Hb_010883_210--Hb_000768_050 Hb_003106_070 Hb_003106_070 Hb_010883_210--Hb_003106_070 Hb_003688_100 Hb_003688_100 Hb_010883_210--Hb_003688_100 Hb_010449_020 Hb_010449_020 Hb_010883_210--Hb_010449_020 Hb_002918_280 Hb_002918_280 Hb_010883_210--Hb_002918_280 Hb_005489_130 Hb_005489_130 Hb_010883_210--Hb_005489_130 Hb_000768_050--Hb_010449_020 Hb_002495_070 Hb_002495_070 Hb_000768_050--Hb_002495_070 Hb_000768_050--Hb_003106_070 Hb_000265_150 Hb_000265_150 Hb_000768_050--Hb_000265_150 Hb_000768_050--Hb_003688_100 Hb_004722_060 Hb_004722_060 Hb_000768_050--Hb_004722_060 Hb_004920_040 Hb_004920_040 Hb_003106_070--Hb_004920_040 Hb_003106_070--Hb_002495_070 Hb_003106_070--Hb_010449_020 Hb_003185_020 Hb_003185_020 Hb_003106_070--Hb_003185_020 Hb_011794_090 Hb_011794_090 Hb_003688_100--Hb_011794_090 Hb_001514_020 Hb_001514_020 Hb_003688_100--Hb_001514_020 Hb_003688_100--Hb_004722_060 Hb_003688_100--Hb_010449_020 Hb_011537_010 Hb_011537_010 Hb_003688_100--Hb_011537_010 Hb_003688_100--Hb_005489_130 Hb_010449_020--Hb_003185_020 Hb_000392_270 Hb_000392_270 Hb_010449_020--Hb_000392_270 Hb_010449_020--Hb_005489_130 Hb_010449_020--Hb_004722_060 Hb_084934_010 Hb_084934_010 Hb_002918_280--Hb_084934_010 Hb_005031_070 Hb_005031_070 Hb_002918_280--Hb_005031_070 Hb_000221_100 Hb_000221_100 Hb_002918_280--Hb_000221_100 Hb_000680_150 Hb_000680_150 Hb_002918_280--Hb_000680_150 Hb_001386_130 Hb_001386_130 Hb_002918_280--Hb_001386_130 Hb_000045_130 Hb_000045_130 Hb_005489_130--Hb_000045_130 Hb_005489_130--Hb_004722_060 Hb_000808_040 Hb_000808_040 Hb_005489_130--Hb_000808_040 Hb_159558_030 Hb_159558_030 Hb_005489_130--Hb_159558_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2430.47 727.752 196.896 448.46 1986.93 1361.8
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2147.37 1847.96 603.28 531.631 135.634

CAGE analysis