Hb_010921_010

Information

Type -
Description -
Location Contig10921: 6131-9398
Sequence    

Annotation

kegg
ID tcc:TCM_011273
description Small nuclear ribonucleoprotein family protein
nr
ID XP_007045527.1
description Small nuclear ribonucleoprotein family protein [Theobroma cacao]
swissprot
ID Q18786
description Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1
trembl
ID A0A061EGD1
description Small nuclear ribonucleoprotein family protein OS=Theobroma cacao GN=TCM_011273 PE=4 SV=1
Gene Ontology
ID GO:0030532
description small nuclear ribonucleoprotein sm d2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02798: 6281-9315 , PASA_asmbl_02799: 8481-8672
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010921_010 0.0 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
2 Hb_001512_060 0.0553257731 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35850, mitochondrial [Jatropha curcas]
3 Hb_001534_120 0.0574479294 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
4 Hb_005993_040 0.0702129446 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit wdr4 [Jatropha curcas]
5 Hb_007154_020 0.0705715201 - - -
6 Hb_002686_020 0.0712488287 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
7 Hb_000109_090 0.0717035414 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
8 Hb_001489_060 0.0723071841 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
9 Hb_005322_040 0.0731595586 - - 60S ribosomal protein L9, putative [Ricinus communis]
10 Hb_004787_060 0.0743790921 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
11 Hb_001504_110 0.0745278642 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
12 Hb_000920_180 0.0748888061 - - PREDICTED: F-box protein SKIP5 [Jatropha curcas]
13 Hb_001504_020 0.075162771 - - 40S ribosomal protein S12A [Hevea brasiliensis]
14 Hb_001821_010 0.0759312334 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
15 Hb_001540_010 0.0760985826 - - PREDICTED: uncharacterized protein LOC105639920 [Jatropha curcas]
16 Hb_003050_080 0.0763066658 - - 40S ribosomal protein S14, putative [Ricinus communis]
17 Hb_002043_190 0.0763700313 - - rwd domain-containing protein, putative [Ricinus communis]
18 Hb_000362_200 0.0778260254 - - exonuclease family protein [Populus trichocarpa]
19 Hb_007477_070 0.0781712559 - - hypothetical protein JCGZ_17593 [Jatropha curcas]
20 Hb_028227_020 0.0787805887 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010921_010 Hb_010921_010 Hb_001512_060 Hb_001512_060 Hb_010921_010--Hb_001512_060 Hb_001534_120 Hb_001534_120 Hb_010921_010--Hb_001534_120 Hb_005993_040 Hb_005993_040 Hb_010921_010--Hb_005993_040 Hb_007154_020 Hb_007154_020 Hb_010921_010--Hb_007154_020 Hb_002686_020 Hb_002686_020 Hb_010921_010--Hb_002686_020 Hb_000109_090 Hb_000109_090 Hb_010921_010--Hb_000109_090 Hb_000362_200 Hb_000362_200 Hb_001512_060--Hb_000362_200 Hb_001512_060--Hb_001534_120 Hb_007477_070 Hb_007477_070 Hb_001512_060--Hb_007477_070 Hb_001512_060--Hb_007154_020 Hb_002346_020 Hb_002346_020 Hb_001512_060--Hb_002346_020 Hb_001195_480 Hb_001195_480 Hb_001534_120--Hb_001195_480 Hb_001534_120--Hb_007477_070 Hb_002534_150 Hb_002534_150 Hb_001534_120--Hb_002534_150 Hb_001534_120--Hb_000362_200 Hb_002043_190 Hb_002043_190 Hb_005993_040--Hb_002043_190 Hb_002928_130 Hb_002928_130 Hb_005993_040--Hb_002928_130 Hb_011571_020 Hb_011571_020 Hb_005993_040--Hb_011571_020 Hb_011360_140 Hb_011360_140 Hb_005993_040--Hb_011360_140 Hb_000392_440 Hb_000392_440 Hb_005993_040--Hb_000392_440 Hb_003126_080 Hb_003126_080 Hb_005993_040--Hb_003126_080 Hb_011381_060 Hb_011381_060 Hb_007154_020--Hb_011381_060 Hb_010661_030 Hb_010661_030 Hb_007154_020--Hb_010661_030 Hb_005186_050 Hb_005186_050 Hb_007154_020--Hb_005186_050 Hb_001348_070 Hb_001348_070 Hb_007154_020--Hb_001348_070 Hb_003050_080 Hb_003050_080 Hb_002686_020--Hb_003050_080 Hb_008878_030 Hb_008878_030 Hb_002686_020--Hb_008878_030 Hb_001540_010 Hb_001540_010 Hb_002686_020--Hb_001540_010 Hb_000331_080 Hb_000331_080 Hb_002686_020--Hb_000331_080 Hb_001821_010 Hb_001821_010 Hb_002686_020--Hb_001821_010 Hb_007416_030 Hb_007416_030 Hb_002686_020--Hb_007416_030 Hb_000853_170 Hb_000853_170 Hb_000109_090--Hb_000853_170 Hb_003398_130 Hb_003398_130 Hb_000109_090--Hb_003398_130 Hb_000109_090--Hb_003126_080 Hb_000109_090--Hb_002043_190 Hb_000109_090--Hb_005993_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
113.713 48.7186 84.7786 43.4747 105.663 98.801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
123.576 189.399 74.9741 68.8727 48.3754

CAGE analysis