Hb_010921_020

Information

Type -
Description -
Location Contig10921: 30655-34303
Sequence    

Annotation

kegg
ID rcu:RCOM_1148640
description cyclin, putative
nr
ID XP_012072513.1
description PREDICTED: cyclin-SDS [Jatropha curcas]
swissprot
ID Q1PFW3
description Cyclin-SDS OS=Arabidopsis thaliana GN=SDS PE=1 SV=2
trembl
ID A0A067KPL0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04794 PE=3 SV=1
Gene Ontology
ID GO:0005634
description cyclin-sds

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010921_020 0.0 - - PREDICTED: cyclin-SDS [Jatropha curcas]
2 Hb_000922_220 0.1498607046 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
3 Hb_000175_270 0.1518514559 - - PREDICTED: methyl-CpG-binding domain-containing protein 11 isoform X1 [Jatropha curcas]
4 Hb_001073_030 0.1527634224 - - PREDICTED: APO protein 3, mitochondrial [Jatropha curcas]
5 Hb_000032_020 0.1573854652 - - Centromeric protein E, putative [Ricinus communis]
6 Hb_005183_140 0.1589689295 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
7 Hb_000320_360 0.1612276175 - - PREDICTED: starch synthase 3, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
8 Hb_002804_030 0.1620074985 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
9 Hb_187005_010 0.1629710665 transcription factor TF Family: MYB-related PREDICTED: 1-phosphatidylinositol 3-phosphate 5-kinase [Jatropha curcas]
10 Hb_000189_470 0.1636161633 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
11 Hb_000631_140 0.1650965539 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
12 Hb_000413_250 0.1656074277 - - Cysteine-rich RLK 29 [Theobroma cacao]
13 Hb_000221_180 0.1665009933 - - VQ motif-containing family protein [Populus trichocarpa]
14 Hb_002918_320 0.1685640728 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
15 Hb_000613_220 0.1691315473 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_000126_070 0.1755742201 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
17 Hb_014006_010 0.1764726885 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
18 Hb_000879_030 0.1778147185 - - PREDICTED: uncharacterized protein LOC103707552 [Phoenix dactylifera]
19 Hb_122273_020 0.1782947355 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
20 Hb_002110_110 0.1784211029 - - PREDICTED: uncharacterized protein LOC104212668 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_010921_020 Hb_010921_020 Hb_000922_220 Hb_000922_220 Hb_010921_020--Hb_000922_220 Hb_000175_270 Hb_000175_270 Hb_010921_020--Hb_000175_270 Hb_001073_030 Hb_001073_030 Hb_010921_020--Hb_001073_030 Hb_000032_020 Hb_000032_020 Hb_010921_020--Hb_000032_020 Hb_005183_140 Hb_005183_140 Hb_010921_020--Hb_005183_140 Hb_000320_360 Hb_000320_360 Hb_010921_020--Hb_000320_360 Hb_004875_010 Hb_004875_010 Hb_000922_220--Hb_004875_010 Hb_122273_020 Hb_122273_020 Hb_000922_220--Hb_122273_020 Hb_002804_030 Hb_002804_030 Hb_000922_220--Hb_002804_030 Hb_000434_010 Hb_000434_010 Hb_000922_220--Hb_000434_010 Hb_002918_320 Hb_002918_320 Hb_000922_220--Hb_002918_320 Hb_172421_010 Hb_172421_010 Hb_000922_220--Hb_172421_010 Hb_187005_010 Hb_187005_010 Hb_000175_270--Hb_187005_010 Hb_001499_070 Hb_001499_070 Hb_000175_270--Hb_001499_070 Hb_000221_180 Hb_000221_180 Hb_000175_270--Hb_000221_180 Hb_014006_010 Hb_014006_010 Hb_000175_270--Hb_014006_010 Hb_019863_060 Hb_019863_060 Hb_000175_270--Hb_019863_060 Hb_000340_360 Hb_000340_360 Hb_000175_270--Hb_000340_360 Hb_001073_030--Hb_000175_270 Hb_000438_020 Hb_000438_020 Hb_001073_030--Hb_000438_020 Hb_000418_150 Hb_000418_150 Hb_001073_030--Hb_000418_150 Hb_001073_030--Hb_000221_180 Hb_001073_030--Hb_000922_220 Hb_000879_030 Hb_000879_030 Hb_000032_020--Hb_000879_030 Hb_002110_110 Hb_002110_110 Hb_000032_020--Hb_002110_110 Hb_000032_020--Hb_000221_180 Hb_073973_020 Hb_073973_020 Hb_000032_020--Hb_073973_020 Hb_000032_020--Hb_000175_270 Hb_005542_010 Hb_005542_010 Hb_000032_020--Hb_005542_010 Hb_005183_140--Hb_000340_360 Hb_000404_030 Hb_000404_030 Hb_005183_140--Hb_000404_030 Hb_005183_140--Hb_014006_010 Hb_002249_030 Hb_002249_030 Hb_005183_140--Hb_002249_030 Hb_005183_140--Hb_001499_070 Hb_006794_020 Hb_006794_020 Hb_005183_140--Hb_006794_020 Hb_013399_090 Hb_013399_090 Hb_000320_360--Hb_013399_090 Hb_000359_220 Hb_000359_220 Hb_000320_360--Hb_000359_220 Hb_015778_060 Hb_015778_060 Hb_000320_360--Hb_015778_060 Hb_001408_120 Hb_001408_120 Hb_000320_360--Hb_001408_120 Hb_002942_130 Hb_002942_130 Hb_000320_360--Hb_002942_130 Hb_000008_410 Hb_000008_410 Hb_000320_360--Hb_000008_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.404638 3.66757 1.06374 0.714951 0.949842 0.230449
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.136915 0.172353 0.121932 1.32239 2.67118

CAGE analysis