Hb_010921_040

Information

Type transcription factor
Description TF Family: PLATZ
Location Contig10921: 40073-42252
Sequence    

Annotation

kegg
ID rcu:RCOM_1148660
description protein with unknown function
nr
ID XP_012072352.1
description PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KT65
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04796 PE=4 SV=1
Gene Ontology
ID GO:0005622
description platz transcription factor family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02801: 40402-41614
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010921_040 0.0 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105634154 [Jatropha curcas]
2 Hb_000110_380 0.2335385646 - - PREDICTED: uncharacterized protein LOC105642019 [Jatropha curcas]
3 Hb_064122_010 0.2363567787 - - PREDICTED: uncharacterized protein LOC105631858 isoform X2 [Jatropha curcas]
4 Hb_001170_010 0.2457059555 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_004724_450 0.2499620514 - - PREDICTED: uncharacterized protein LOC105647069 isoform X1 [Jatropha curcas]
6 Hb_003095_080 0.2541432294 - - -
7 Hb_004267_030 0.2559575192 - - cytochrome P450, putative [Ricinus communis]
8 Hb_005813_010 0.2623714669 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
9 Hb_030982_060 0.2661310146 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005306_120 0.2677293964 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000110_290 0.2687025149 - - conserved hypothetical protein [Ricinus communis]
12 Hb_032225_030 0.270617006 - - PREDICTED: leucine-rich repeat extensin-like protein 2 [Jatropha curcas]
13 Hb_001369_140 0.2774497868 - - conserved hypothetical protein [Ricinus communis]
14 Hb_011099_010 0.2821067109 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
15 Hb_001248_120 0.2849820741 - - conserved hypothetical protein [Ricinus communis]
16 Hb_016875_010 0.2877342846 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_001115_010 0.2887712071 - - PREDICTED: 4-coumarate--CoA ligase 2-like [Jatropha curcas]
18 Hb_002067_130 0.2916215278 - - putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana]
19 Hb_001946_020 0.2927610469 - - hypothetical protein RCOM_0224470 [Ricinus communis]
20 Hb_000836_230 0.2968654973 - - Uncharacterized protein TCM_041879 [Theobroma cacao]

Gene co-expression network

sample Hb_010921_040 Hb_010921_040 Hb_000110_380 Hb_000110_380 Hb_010921_040--Hb_000110_380 Hb_064122_010 Hb_064122_010 Hb_010921_040--Hb_064122_010 Hb_001170_010 Hb_001170_010 Hb_010921_040--Hb_001170_010 Hb_004724_450 Hb_004724_450 Hb_010921_040--Hb_004724_450 Hb_003095_080 Hb_003095_080 Hb_010921_040--Hb_003095_080 Hb_004267_030 Hb_004267_030 Hb_010921_040--Hb_004267_030 Hb_005813_010 Hb_005813_010 Hb_000110_380--Hb_005813_010 Hb_032225_030 Hb_032225_030 Hb_000110_380--Hb_032225_030 Hb_028001_020 Hb_028001_020 Hb_000110_380--Hb_028001_020 Hb_002539_040 Hb_002539_040 Hb_000110_380--Hb_002539_040 Hb_000110_380--Hb_001170_010 Hb_005408_070 Hb_005408_070 Hb_000110_380--Hb_005408_070 Hb_001369_140 Hb_001369_140 Hb_064122_010--Hb_001369_140 Hb_009711_040 Hb_009711_040 Hb_064122_010--Hb_009711_040 Hb_000676_380 Hb_000676_380 Hb_064122_010--Hb_000676_380 Hb_003090_230 Hb_003090_230 Hb_064122_010--Hb_003090_230 Hb_009732_040 Hb_009732_040 Hb_064122_010--Hb_009732_040 Hb_142382_010 Hb_142382_010 Hb_064122_010--Hb_142382_010 Hb_009736_010 Hb_009736_010 Hb_001170_010--Hb_009736_010 Hb_001170_010--Hb_032225_030 Hb_004195_090 Hb_004195_090 Hb_001170_010--Hb_004195_090 Hb_029921_030 Hb_029921_030 Hb_001170_010--Hb_029921_030 Hb_030982_060 Hb_030982_060 Hb_001170_010--Hb_030982_060 Hb_004724_450--Hb_009736_010 Hb_002835_340 Hb_002835_340 Hb_004724_450--Hb_002835_340 Hb_004724_450--Hb_000110_380 Hb_004724_450--Hb_005408_070 Hb_003592_030 Hb_003592_030 Hb_004724_450--Hb_003592_030 Hb_004724_450--Hb_001170_010 Hb_003095_080--Hb_004267_030 Hb_001946_020 Hb_001946_020 Hb_003095_080--Hb_001946_020 Hb_016875_010 Hb_016875_010 Hb_003095_080--Hb_016875_010 Hb_007181_030 Hb_007181_030 Hb_003095_080--Hb_007181_030 Hb_008054_060 Hb_008054_060 Hb_003095_080--Hb_008054_060 Hb_112440_010 Hb_112440_010 Hb_003095_080--Hb_112440_010 Hb_004267_030--Hb_001946_020 Hb_004267_030--Hb_007181_030 Hb_004267_030--Hb_016875_010 Hb_185111_010 Hb_185111_010 Hb_004267_030--Hb_185111_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.120092 0.318905 0.183713 4.66464 0.039756 0.0390686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.096731 1.31906 0.33325 2.978 0

CAGE analysis