Hb_010921_050

Information

Type -
Description -
Location Contig10921: 46858-52882
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa003049mg
description hypothetical protein
nr
ID XP_012072353.1
description PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
swissprot
ID F4HVJ3
description Protein POLLEN DEFECTIVE IN GUIDANCE 1 OS=Arabidopsis thaliana GN=POD1 PE=1 SV=1
trembl
ID A0A067L241
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04797 PE=4 SV=1
Gene Ontology
ID GO:0032501
description protein pollen defective in guidance 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02802: 48123-52923 , PASA_asmbl_02803: 46842-52925 , PASA_asmbl_02804: 47571-47693
cDNA
(Sanger)
(ID:Location)		 024_C21.ab1: 52665-52923

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010921_050 0.0 - - PREDICTED: protein POLLEN DEFECTIVE IN GUIDANCE 1 isoform X1 [Jatropha curcas]
2 Hb_000477_050 0.0658177258 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
3 Hb_183510_020 0.0702434151 - - coated vesicle membrane protein, putative [Ricinus communis]
4 Hb_001828_180 0.0705160858 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
5 Hb_002400_340 0.0710376572 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
6 Hb_001301_150 0.0752967711 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
7 Hb_000120_280 0.0805050492 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
8 Hb_004319_080 0.0810093206 - - PREDICTED: GPI ethanolamine phosphate transferase 1 [Jatropha curcas]
9 Hb_004109_320 0.0826473258 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
10 Hb_000816_250 0.0838877148 - - PREDICTED: uncharacterized protein LOC105649197 isoform X1 [Jatropha curcas]
11 Hb_002046_010 0.0848990943 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000803_270 0.0849321744 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
13 Hb_000510_340 0.087673546 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
14 Hb_002439_010 0.0876833482 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
15 Hb_002232_360 0.0881242372 - - PREDICTED: proline iminopeptidase isoform X2 [Jatropha curcas]
16 Hb_002989_020 0.0884493519 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
17 Hb_001009_320 0.0893599848 - - PREDICTED: uncharacterized protein LOC105640250 [Jatropha curcas]
18 Hb_000710_040 0.0896019947 - - PREDICTED: HEAT repeat-containing protein 6 [Jatropha curcas]
19 Hb_000011_100 0.0900222012 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
20 Hb_164390_010 0.0907791 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]

Gene co-expression network

sample Hb_010921_050 Hb_010921_050 Hb_000477_050 Hb_000477_050 Hb_010921_050--Hb_000477_050 Hb_183510_020 Hb_183510_020 Hb_010921_050--Hb_183510_020 Hb_001828_180 Hb_001828_180 Hb_010921_050--Hb_001828_180 Hb_002400_340 Hb_002400_340 Hb_010921_050--Hb_002400_340 Hb_001301_150 Hb_001301_150 Hb_010921_050--Hb_001301_150 Hb_000120_280 Hb_000120_280 Hb_010921_050--Hb_000120_280 Hb_002989_020 Hb_002989_020 Hb_000477_050--Hb_002989_020 Hb_004109_320 Hb_004109_320 Hb_000477_050--Hb_004109_320 Hb_001009_320 Hb_001009_320 Hb_000477_050--Hb_001009_320 Hb_000477_050--Hb_000120_280 Hb_000460_080 Hb_000460_080 Hb_000477_050--Hb_000460_080 Hb_003528_030 Hb_003528_030 Hb_000477_050--Hb_003528_030 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_005867_070 Hb_005867_070 Hb_183510_020--Hb_005867_070 Hb_000011_100 Hb_000011_100 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_000710_040 Hb_000710_040 Hb_183510_020--Hb_000710_040 Hb_183510_020--Hb_001301_150 Hb_000663_060 Hb_000663_060 Hb_001828_180--Hb_000663_060 Hb_000363_190 Hb_000363_190 Hb_001828_180--Hb_000363_190 Hb_000778_010 Hb_000778_010 Hb_001828_180--Hb_000778_010 Hb_023001_040 Hb_023001_040 Hb_001828_180--Hb_023001_040 Hb_002301_100 Hb_002301_100 Hb_001828_180--Hb_002301_100 Hb_002439_010 Hb_002439_010 Hb_001828_180--Hb_002439_010 Hb_164390_010 Hb_164390_010 Hb_002400_340--Hb_164390_010 Hb_002400_340--Hb_004109_320 Hb_000339_040 Hb_000339_040 Hb_002400_340--Hb_000339_040 Hb_163175_010 Hb_163175_010 Hb_002400_340--Hb_163175_010 Hb_001456_060 Hb_001456_060 Hb_002400_340--Hb_001456_060 Hb_171900_090 Hb_171900_090 Hb_002400_340--Hb_171900_090 Hb_003883_060 Hb_003883_060 Hb_001301_150--Hb_003883_060 Hb_000138_100 Hb_000138_100 Hb_001301_150--Hb_000138_100 Hb_004319_080 Hb_004319_080 Hb_001301_150--Hb_004319_080 Hb_001876_050 Hb_001876_050 Hb_001301_150--Hb_001876_050 Hb_000329_800 Hb_000329_800 Hb_001301_150--Hb_000329_800 Hb_004267_040 Hb_004267_040 Hb_000120_280--Hb_004267_040 Hb_000120_280--Hb_000011_100 Hb_000120_280--Hb_183510_020 Hb_000120_280--Hb_001009_320 Hb_002681_090 Hb_002681_090 Hb_000120_280--Hb_002681_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.24984 5.57544 7.10276 7.40819 6.27291 4.36253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.48286 6.68763 4.3085 10.6967 6.4262

CAGE analysis