Hb_010925_020

Information

Type -
Description -
Location Contig10925: 52005-53710
Sequence    

Annotation

kegg
ID pop:POPTR_0002s23490g
description POPTRDRAFT_552845; hypothetical protein
nr
ID XP_012072599.1
description PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
swissprot
ID Q5XVJ4
description Fanconi-associated nuclease 1 homolog OS=Arabidopsis thaliana GN=At1g48360 PE=2 SV=2
trembl
ID A0A067KSB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05775 PE=4 SV=1
Gene Ontology
ID GO:0003676
description fanconi-associated nuclease 1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02808: 35330-52286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010925_020 0.0 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
2 Hb_003029_130 0.0729589612 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
3 Hb_001473_090 0.0772044437 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
4 Hb_000935_090 0.0808011027 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]
5 Hb_001178_150 0.0848070005 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
6 Hb_001369_350 0.0861822942 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
7 Hb_029904_020 0.096292515 - - hypothetical protein JCGZ_06227 [Jatropha curcas]
8 Hb_000487_220 0.0995330156 - - eukaryotic translation elongation factor, putative [Ricinus communis]
9 Hb_102269_010 0.1006937787 - - hypothetical protein POPTR_0006s28940g [Populus trichocarpa]
10 Hb_002307_350 0.1007561525 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
11 Hb_000209_070 0.101461206 - - PREDICTED: chloride channel protein CLC-f isoform X1 [Jatropha curcas]
12 Hb_015099_010 0.1019086684 - - PREDICTED: probable glucan 1,3-alpha-glucosidase [Jatropha curcas]
13 Hb_000441_180 0.1029898812 - - Early endosome antigen, putative [Ricinus communis]
14 Hb_000035_410 0.1033514855 - - PREDICTED: eukaryotic translation initiation factor 3 subunit B-like [Jatropha curcas]
15 Hb_000206_120 0.1049083231 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 1 [Jatropha curcas]
16 Hb_000029_320 0.1050429018 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
17 Hb_000832_220 0.1057666557 - - PREDICTED: uncharacterized protein LOC105641576 isoform X1 [Jatropha curcas]
18 Hb_000160_290 0.1070280743 - - unnamed protein product [Vitis vinifera]
19 Hb_003656_180 0.1075001285 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
20 Hb_001085_320 0.1081277987 transcription factor TF Family: LUG WD-repeat protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_010925_020 Hb_010925_020 Hb_003029_130 Hb_003029_130 Hb_010925_020--Hb_003029_130 Hb_001473_090 Hb_001473_090 Hb_010925_020--Hb_001473_090 Hb_000935_090 Hb_000935_090 Hb_010925_020--Hb_000935_090 Hb_001178_150 Hb_001178_150 Hb_010925_020--Hb_001178_150 Hb_001369_350 Hb_001369_350 Hb_010925_020--Hb_001369_350 Hb_029904_020 Hb_029904_020 Hb_010925_020--Hb_029904_020 Hb_000487_220 Hb_000487_220 Hb_003029_130--Hb_000487_220 Hb_015099_010 Hb_015099_010 Hb_003029_130--Hb_015099_010 Hb_003029_130--Hb_001473_090 Hb_003029_130--Hb_000935_090 Hb_003029_130--Hb_001178_150 Hb_000209_070 Hb_000209_070 Hb_001473_090--Hb_000209_070 Hb_002749_110 Hb_002749_110 Hb_001473_090--Hb_002749_110 Hb_001473_090--Hb_001178_150 Hb_000347_570 Hb_000347_570 Hb_001473_090--Hb_000347_570 Hb_009151_020 Hb_009151_020 Hb_001473_090--Hb_009151_020 Hb_000785_040 Hb_000785_040 Hb_001473_090--Hb_000785_040 Hb_000935_090--Hb_001178_150 Hb_001493_040 Hb_001493_040 Hb_000935_090--Hb_001493_040 Hb_001417_050 Hb_001417_050 Hb_000935_090--Hb_001417_050 Hb_000796_190 Hb_000796_190 Hb_000935_090--Hb_000796_190 Hb_000025_650 Hb_000025_650 Hb_000935_090--Hb_000025_650 Hb_004429_160 Hb_004429_160 Hb_000935_090--Hb_004429_160 Hb_001178_150--Hb_000347_570 Hb_001178_150--Hb_000796_190 Hb_001178_150--Hb_009151_020 Hb_000120_620 Hb_000120_620 Hb_001178_150--Hb_000120_620 Hb_001369_350--Hb_001178_150 Hb_001369_350--Hb_000935_090 Hb_002307_350 Hb_002307_350 Hb_001369_350--Hb_002307_350 Hb_001369_350--Hb_000120_620 Hb_001369_350--Hb_000025_650 Hb_001021_220 Hb_001021_220 Hb_029904_020--Hb_001021_220 Hb_000208_260 Hb_000208_260 Hb_029904_020--Hb_000208_260 Hb_012215_010 Hb_012215_010 Hb_029904_020--Hb_012215_010 Hb_010150_020 Hb_010150_020 Hb_029904_020--Hb_010150_020 Hb_001948_130 Hb_001948_130 Hb_029904_020--Hb_001948_130 Hb_003549_090 Hb_003549_090 Hb_029904_020--Hb_003549_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43014 1.32116 1.08553 1.19516 1.81845 2.85277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.742136 0.243162 0.530898 0.844593 1.08066

CAGE analysis