Hb_010926_020

Information

Type -
Description -
Location Contig10926: 38268-38542
Sequence    

Annotation

kegg
ID mdm:103454438
description uncharacterized LOC103454438
nr
ID XP_010501354.1
description PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
swissprot
ID Q10040
description Putative zinc protease C28F5.4 OS=Caenorhabditis elegans GN=C28F5.4 PE=3 SV=2
trembl
ID M0S8X0
description Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1
Gene Ontology
ID GO:0004222
description zinc- peroxisomal-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02809: 17533-38544
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010926_020 0.0 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Camelina sativa]
2 Hb_057018_010 0.0533178456 - - hypothetical protein JCGZ_04004 [Jatropha curcas]
3 Hb_072670_010 0.0653281559 - - Calcium-activated outward-rectifying potassium channel, putative [Ricinus communis]
4 Hb_005736_010 0.0774829012 - - PREDICTED: bidirectional sugar transporter SWEET1 isoform X2 [Jatropha curcas]
5 Hb_002511_050 0.1055872073 - - ATP binding protein, putative [Ricinus communis]
6 Hb_002894_020 0.1076994605 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Jatropha curcas]
7 Hb_000224_020 0.1142458371 - - PREDICTED: uncharacterized protein LOC105640888 [Jatropha curcas]
8 Hb_033772_040 0.1223244957 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000445_480 0.1294597814 - - cytochrome P450, putative [Ricinus communis]
10 Hb_004474_020 0.1307597973 - - aldo-keto reductase, putative [Ricinus communis]
11 Hb_107495_060 0.1310536189 - - Cell division protein kinase, putative [Ricinus communis]
12 Hb_001529_010 0.132630905 - - -
13 Hb_008385_010 0.138794485 - - sulfate transporter, putative [Ricinus communis]
14 Hb_001255_030 0.140298291 - - PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840, partial [Sesamum indicum]
15 Hb_123887_010 0.1416726508 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
16 Hb_004899_380 0.1432683765 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001248_180 0.1449427595 - - -
18 Hb_000174_130 0.1459862659 - - flowering locus T-like protein [Fagus crenata]
19 Hb_103000_010 0.1461891222 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
20 Hb_009411_030 0.1462713496 - - PREDICTED: bifunctional monodehydroascorbate reductase and carbonic anhydrase nectarin-3-like [Malus domestica]

Gene co-expression network

sample Hb_010926_020 Hb_010926_020 Hb_057018_010 Hb_057018_010 Hb_010926_020--Hb_057018_010 Hb_072670_010 Hb_072670_010 Hb_010926_020--Hb_072670_010 Hb_005736_010 Hb_005736_010 Hb_010926_020--Hb_005736_010 Hb_002511_050 Hb_002511_050 Hb_010926_020--Hb_002511_050 Hb_002894_020 Hb_002894_020 Hb_010926_020--Hb_002894_020 Hb_000224_020 Hb_000224_020 Hb_010926_020--Hb_000224_020 Hb_057018_010--Hb_072670_010 Hb_057018_010--Hb_005736_010 Hb_004652_040 Hb_004652_040 Hb_057018_010--Hb_004652_040 Hb_002014_120 Hb_002014_120 Hb_057018_010--Hb_002014_120 Hb_003337_010 Hb_003337_010 Hb_057018_010--Hb_003337_010 Hb_107495_060 Hb_107495_060 Hb_072670_010--Hb_107495_060 Hb_072670_010--Hb_005736_010 Hb_087314_010 Hb_087314_010 Hb_072670_010--Hb_087314_010 Hb_148914_020 Hb_148914_020 Hb_072670_010--Hb_148914_020 Hb_005736_010--Hb_002511_050 Hb_005736_010--Hb_107495_060 Hb_033772_040 Hb_033772_040 Hb_005736_010--Hb_033772_040 Hb_008385_010 Hb_008385_010 Hb_002511_050--Hb_008385_010 Hb_001529_010 Hb_001529_010 Hb_002511_050--Hb_001529_010 Hb_003582_010 Hb_003582_010 Hb_002511_050--Hb_003582_010 Hb_000445_480 Hb_000445_480 Hb_002511_050--Hb_000445_480 Hb_002894_020--Hb_000445_480 Hb_002894_020--Hb_000224_020 Hb_033153_030 Hb_033153_030 Hb_002894_020--Hb_033153_030 Hb_007426_100 Hb_007426_100 Hb_002894_020--Hb_007426_100 Hb_002874_100 Hb_002874_100 Hb_002894_020--Hb_002874_100 Hb_000363_100 Hb_000363_100 Hb_002894_020--Hb_000363_100 Hb_004474_020 Hb_004474_020 Hb_000224_020--Hb_004474_020 Hb_004899_380 Hb_004899_380 Hb_000224_020--Hb_004899_380 Hb_000224_050 Hb_000224_050 Hb_000224_020--Hb_000224_050 Hb_000917_220 Hb_000917_220 Hb_000224_020--Hb_000917_220 Hb_174829_030 Hb_174829_030 Hb_000224_020--Hb_174829_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 35.826 22.1432 166.897 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.65523 0

CAGE analysis