Hb_010931_060

Information

Type -
Description -
Location Contig10931: 50152-56087
Sequence    

Annotation

kegg
ID sot:102580698
description probable metal-nicotianamine transporter YSL7-like
nr
ID KDP22031.1
description hypothetical protein JCGZ_03001 [Jatropha curcas]
swissprot
ID Q9SHY2
description Probable metal-nicotianamine transporter YSL7 OS=Arabidopsis thaliana GN=YSL7 PE=2 SV=1
trembl
ID A0A059A5M6
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K02320 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probable metal-nicotianamine transporter ysl7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010931_060 0.0 - - hypothetical protein JCGZ_03001 [Jatropha curcas]
2 Hb_006816_330 0.2116306576 - - exonuclease, putative [Ricinus communis]
3 Hb_066967_020 0.2302474941 - - RAB6-interacting protein, putative [Ricinus communis]
4 Hb_002105_010 0.2397717065 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000424_090 0.2407171288 - - PREDICTED: fatty-acid-binding protein 2 [Jatropha curcas]
6 Hb_000694_030 0.2420669706 - - PREDICTED: nucleobase-ascorbate transporter 1 [Jatropha curcas]
7 Hb_004994_320 0.2566044942 - - PREDICTED: putative ripening-related protein 1 [Cicer arietinum]
8 Hb_006326_050 0.2626958245 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
9 Hb_004176_060 0.2627222531 - - -
10 Hb_000365_170 0.2659235921 - - PREDICTED: 50S ribosomal protein L17, chloroplastic isoform X3 [Jatropha curcas]
11 Hb_003581_210 0.2662697858 transcription factor TF Family: Whirly PREDICTED: single-stranded DNA-binding protein WHY1, chloroplastic [Jatropha curcas]
12 Hb_005527_010 0.268854421 - - PREDICTED: cell division protein FtsY homolog, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_002831_040 0.2693785136 - - PREDICTED: fatty acid amide hydrolase-like [Jatropha curcas]
14 Hb_007765_070 0.2700139731 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
15 Hb_029142_030 0.2723997469 rubber biosynthesis Gene Name: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Hevea brasiliensis]
16 Hb_000140_490 0.2738400935 - - BnaC01g32630D [Brassica napus]
17 Hb_012586_050 0.2740816113 - - PREDICTED: triosephosphate isomerase, cytosolic [Prunus mume]
18 Hb_002255_040 0.2756644479 - - PREDICTED: biotin synthase [Jatropha curcas]
19 Hb_000571_010 0.2777478036 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Gossypium raimondii]
20 Hb_015531_030 0.279476733 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010931_060 Hb_010931_060 Hb_006816_330 Hb_006816_330 Hb_010931_060--Hb_006816_330 Hb_066967_020 Hb_066967_020 Hb_010931_060--Hb_066967_020 Hb_002105_010 Hb_002105_010 Hb_010931_060--Hb_002105_010 Hb_000424_090 Hb_000424_090 Hb_010931_060--Hb_000424_090 Hb_000694_030 Hb_000694_030 Hb_010931_060--Hb_000694_030 Hb_004994_320 Hb_004994_320 Hb_010931_060--Hb_004994_320 Hb_001486_170 Hb_001486_170 Hb_006816_330--Hb_001486_170 Hb_008511_060 Hb_008511_060 Hb_006816_330--Hb_008511_060 Hb_013726_080 Hb_013726_080 Hb_006816_330--Hb_013726_080 Hb_002805_060 Hb_002805_060 Hb_006816_330--Hb_002805_060 Hb_003430_090 Hb_003430_090 Hb_006816_330--Hb_003430_090 Hb_012586_050 Hb_012586_050 Hb_006816_330--Hb_012586_050 Hb_021650_010 Hb_021650_010 Hb_066967_020--Hb_021650_010 Hb_006555_040 Hb_006555_040 Hb_066967_020--Hb_006555_040 Hb_001232_150 Hb_001232_150 Hb_066967_020--Hb_001232_150 Hb_029142_030 Hb_029142_030 Hb_066967_020--Hb_029142_030 Hb_000140_440 Hb_000140_440 Hb_066967_020--Hb_000140_440 Hb_066967_020--Hb_000694_030 Hb_012098_150 Hb_012098_150 Hb_002105_010--Hb_012098_150 Hb_004116_160 Hb_004116_160 Hb_002105_010--Hb_004116_160 Hb_000676_060 Hb_000676_060 Hb_002105_010--Hb_000676_060 Hb_002105_010--Hb_066967_020 Hb_006326_050 Hb_006326_050 Hb_002105_010--Hb_006326_050 Hb_005271_160 Hb_005271_160 Hb_002105_010--Hb_005271_160 Hb_000139_120 Hb_000139_120 Hb_000424_090--Hb_000139_120 Hb_000365_170 Hb_000365_170 Hb_000424_090--Hb_000365_170 Hb_005618_060 Hb_005618_060 Hb_000424_090--Hb_005618_060 Hb_007765_070 Hb_007765_070 Hb_000424_090--Hb_007765_070 Hb_008994_010 Hb_008994_010 Hb_000424_090--Hb_008994_010 Hb_005527_010 Hb_005527_010 Hb_000694_030--Hb_005527_010 Hb_006618_070 Hb_006618_070 Hb_000694_030--Hb_006618_070 Hb_002701_120 Hb_002701_120 Hb_000694_030--Hb_002701_120 Hb_001959_240 Hb_001959_240 Hb_000694_030--Hb_001959_240 Hb_000694_030--Hb_029142_030 Hb_118977_010 Hb_118977_010 Hb_004994_320--Hb_118977_010 Hb_004668_110 Hb_004668_110 Hb_004994_320--Hb_004668_110 Hb_001373_110 Hb_001373_110 Hb_004994_320--Hb_001373_110 Hb_007101_160 Hb_007101_160 Hb_004994_320--Hb_007101_160 Hb_001377_030 Hb_001377_030 Hb_004994_320--Hb_001377_030 Hb_002450_040 Hb_002450_040 Hb_004994_320--Hb_002450_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.172335 0.00966735 0.450136 0.0731747 0.102284 0.304328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0522866 0.0330655 0.0485301 0.110555

CAGE analysis