Hb_010931_090

Information

Type -
Description -
Location Contig10931: 82471-85071
Sequence    

Annotation

kegg
ID rcu:RCOM_1434160
description hypothetical protein
nr
ID XP_002512472.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RFF3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1434160 PE=4 SV=1
Gene Ontology
ID GO:0070188
description cst complex subunit ten1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02830: 82461-85073 , PASA_asmbl_02831: 82465-85093
cDNA
(Sanger)
(ID:Location)		 012_G05.ab1: 82461-85073

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010931_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_010655_010 0.1005140848 - - Cycloartenol synthase, putative [Ricinus communis]
3 Hb_000260_120 0.1034616199 - - DNA binding protein, putative [Ricinus communis]
4 Hb_001008_060 0.1038178733 - - PREDICTED: monothiol glutaredoxin-S15, mitochondrial [Jatropha curcas]
5 Hb_004545_060 0.1039368394 - - PREDICTED: trafficking protein particle complex subunit 6B [Jatropha curcas]
6 Hb_003038_030 0.1110355913 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
7 Hb_010172_080 0.1110702203 - - acetylglucosaminyltransferase, putative [Ricinus communis]
8 Hb_063716_050 0.1115075344 - - PREDICTED: uncharacterized protein LOC105634866 [Jatropha curcas]
9 Hb_000174_090 0.1116160745 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
10 Hb_000172_370 0.1122063801 - - -
11 Hb_000402_200 0.1131124938 - - PREDICTED: uncharacterized protein LOC105644655 [Jatropha curcas]
12 Hb_001184_090 0.1135950425 - - PREDICTED: TIP41-like protein [Jatropha curcas]
13 Hb_000085_320 0.113821973 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
14 Hb_148912_010 0.1144225405 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010436_070 0.1149354715 - - PREDICTED: endoribonuclease Dicer homolog 4-like [Nicotiana tomentosiformis]
16 Hb_182026_020 0.1158972492 - - PREDICTED: SUN domain-containing protein 3-like [Jatropha curcas]
17 Hb_002107_130 0.1164276295 - - protein with unknown function [Ricinus communis]
18 Hb_002006_020 0.1172023122 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
19 Hb_002078_150 0.1177778194 - - protein with unknown function [Ricinus communis]
20 Hb_002609_110 0.1192577992 - - hypothetical protein JCGZ_08497 [Jatropha curcas]

Gene co-expression network

sample Hb_010931_090 Hb_010931_090 Hb_010655_010 Hb_010655_010 Hb_010931_090--Hb_010655_010 Hb_000260_120 Hb_000260_120 Hb_010931_090--Hb_000260_120 Hb_001008_060 Hb_001008_060 Hb_010931_090--Hb_001008_060 Hb_004545_060 Hb_004545_060 Hb_010931_090--Hb_004545_060 Hb_003038_030 Hb_003038_030 Hb_010931_090--Hb_003038_030 Hb_010172_080 Hb_010172_080 Hb_010931_090--Hb_010172_080 Hb_132835_010 Hb_132835_010 Hb_010655_010--Hb_132835_010 Hb_032264_110 Hb_032264_110 Hb_010655_010--Hb_032264_110 Hb_001090_040 Hb_001090_040 Hb_010655_010--Hb_001090_040 Hb_000451_010 Hb_000451_010 Hb_010655_010--Hb_000451_010 Hb_004440_090 Hb_004440_090 Hb_010655_010--Hb_004440_090 Hb_004907_080 Hb_004907_080 Hb_010655_010--Hb_004907_080 Hb_000260_120--Hb_004545_060 Hb_000001_050 Hb_000001_050 Hb_000260_120--Hb_000001_050 Hb_004705_100 Hb_004705_100 Hb_000260_120--Hb_004705_100 Hb_000260_120--Hb_001008_060 Hb_000085_320 Hb_000085_320 Hb_000260_120--Hb_000085_320 Hb_009711_030 Hb_009711_030 Hb_001008_060--Hb_009711_030 Hb_002078_450 Hb_002078_450 Hb_001008_060--Hb_002078_450 Hb_022250_040 Hb_022250_040 Hb_001008_060--Hb_022250_040 Hb_001008_060--Hb_000085_320 Hb_011794_070 Hb_011794_070 Hb_001008_060--Hb_011794_070 Hb_000703_140 Hb_000703_140 Hb_001008_060--Hb_000703_140 Hb_010180_020 Hb_010180_020 Hb_004545_060--Hb_010180_020 Hb_000045_090 Hb_000045_090 Hb_004545_060--Hb_000045_090 Hb_002078_150 Hb_002078_150 Hb_004545_060--Hb_002078_150 Hb_000103_560 Hb_000103_560 Hb_004545_060--Hb_000103_560 Hb_141131_010 Hb_141131_010 Hb_004545_060--Hb_141131_010 Hb_004545_060--Hb_003038_030 Hb_148912_010 Hb_148912_010 Hb_003038_030--Hb_148912_010 Hb_002411_170 Hb_002411_170 Hb_003038_030--Hb_002411_170 Hb_003038_030--Hb_141131_010 Hb_000019_230 Hb_000019_230 Hb_003038_030--Hb_000019_230 Hb_000172_370 Hb_000172_370 Hb_003038_030--Hb_000172_370 Hb_002774_060 Hb_002774_060 Hb_010172_080--Hb_002774_060 Hb_005686_060 Hb_005686_060 Hb_010172_080--Hb_005686_060 Hb_009773_020 Hb_009773_020 Hb_010172_080--Hb_009773_020 Hb_010172_080--Hb_002078_150 Hb_010172_080--Hb_004705_100 Hb_004324_310 Hb_004324_310 Hb_010172_080--Hb_004324_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.5811 9.22757 14.198 35.6423 63.2103 45.1189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.099 63.5503 50.319 16.5564 6.52984

CAGE analysis