Hb_010931_120

Information

Type -
Description -
Location Contig10931: 93795-95673
Sequence    

Annotation

kegg
ID pop:POPTR_0005s22320g
description POPTRDRAFT_651665; myosin heavy chain-related family protein
nr
ID XP_002307541.1
description myosin heavy chain-related family protein [Populus trichocarpa]
swissprot
ID Q9SHJ6
description Peroxisomal and mitochondrial division factor 2 OS=Arabidopsis thaliana GN=PMD2 PE=1 SV=1
trembl
ID B9H808
description Myosin heavy chain-related family protein OS=Populus trichocarpa GN=POPTR_0005s22320g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02834: 93819-95544
cDNA
(Sanger)
(ID:Location)		 039_C19.ab1: 94715-95496 , 041_K12.ab1: 94715-95496 , 051_P19.ab1: 94683-95544

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010931_120 0.0 - - myosin heavy chain-related family protein [Populus trichocarpa]
2 Hb_004055_030 0.0699256037 - - casein kinase, putative [Ricinus communis]
3 Hb_011671_430 0.0723793894 - - PREDICTED: uncharacterized protein LOC105648668 [Jatropha curcas]
4 Hb_000445_420 0.0724476162 - - protein transporter, putative [Ricinus communis]
5 Hb_005993_020 0.0727304945 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
6 Hb_002131_020 0.0731862399 transcription factor TF Family: IWS1 PREDICTED: protein IWS1 homolog [Jatropha curcas]
7 Hb_000260_220 0.076052138 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
8 Hb_001936_020 0.0765670967 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
9 Hb_011218_040 0.0786599649 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
10 Hb_000629_010 0.0823693801 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
11 Hb_000630_050 0.0829271042 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006922_100 0.0829762444 - - PREDICTED: uncharacterized protein LOC105645470 isoform X1 [Jatropha curcas]
13 Hb_001680_010 0.083194521 - - Serine/threonine protein kinase SAPK3 [Medicago truncatula]
14 Hb_004355_020 0.0844133087 - - PREDICTED: lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial [Jatropha curcas]
15 Hb_000061_460 0.0853735222 transcription factor TF Family: SNF2 ATP binding protein, putative [Ricinus communis]
16 Hb_002900_190 0.0857357828 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GTL1 [Jatropha curcas]
17 Hb_000011_200 0.086529589 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
18 Hb_014497_050 0.0874260808 transcription factor TF Family: bZIP hypothetical protein JCGZ_08021 [Jatropha curcas]
19 Hb_000123_210 0.0876818346 - - PREDICTED: uncharacterized protein LOC105641576 isoform X2 [Jatropha curcas]
20 Hb_106724_020 0.0879098924 - - PREDICTED: actin-related protein 2/3 complex subunit 1A-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_010931_120 Hb_010931_120 Hb_004055_030 Hb_004055_030 Hb_010931_120--Hb_004055_030 Hb_011671_430 Hb_011671_430 Hb_010931_120--Hb_011671_430 Hb_000445_420 Hb_000445_420 Hb_010931_120--Hb_000445_420 Hb_005993_020 Hb_005993_020 Hb_010931_120--Hb_005993_020 Hb_002131_020 Hb_002131_020 Hb_010931_120--Hb_002131_020 Hb_000260_220 Hb_000260_220 Hb_010931_120--Hb_000260_220 Hb_006922_100 Hb_006922_100 Hb_004055_030--Hb_006922_100 Hb_007441_120 Hb_007441_120 Hb_004055_030--Hb_007441_120 Hb_001124_160 Hb_001124_160 Hb_004055_030--Hb_001124_160 Hb_003813_130 Hb_003813_130 Hb_004055_030--Hb_003813_130 Hb_004055_030--Hb_000445_420 Hb_001199_020 Hb_001199_020 Hb_004055_030--Hb_001199_020 Hb_000038_170 Hb_000038_170 Hb_011671_430--Hb_000038_170 Hb_004577_020 Hb_004577_020 Hb_011671_430--Hb_004577_020 Hb_014497_050 Hb_014497_050 Hb_011671_430--Hb_014497_050 Hb_003058_190 Hb_003058_190 Hb_011671_430--Hb_003058_190 Hb_004355_020 Hb_004355_020 Hb_011671_430--Hb_004355_020 Hb_003158_010 Hb_003158_010 Hb_011671_430--Hb_003158_010 Hb_000445_420--Hb_007441_120 Hb_005663_060 Hb_005663_060 Hb_000445_420--Hb_005663_060 Hb_002016_110 Hb_002016_110 Hb_000445_420--Hb_002016_110 Hb_000445_420--Hb_006922_100 Hb_001680_010 Hb_001680_010 Hb_005993_020--Hb_001680_010 Hb_005993_020--Hb_002131_020 Hb_001301_200 Hb_001301_200 Hb_005993_020--Hb_001301_200 Hb_005993_020--Hb_011671_430 Hb_005532_050 Hb_005532_050 Hb_005993_020--Hb_005532_050 Hb_000630_050 Hb_000630_050 Hb_005993_020--Hb_000630_050 Hb_002131_020--Hb_001680_010 Hb_000983_150 Hb_000983_150 Hb_002131_020--Hb_000983_150 Hb_002835_370 Hb_002835_370 Hb_002131_020--Hb_002835_370 Hb_009627_010 Hb_009627_010 Hb_002131_020--Hb_009627_010 Hb_000031_220 Hb_000031_220 Hb_000260_220--Hb_000031_220 Hb_002054_040 Hb_002054_040 Hb_000260_220--Hb_002054_040 Hb_002374_050 Hb_002374_050 Hb_000260_220--Hb_002374_050 Hb_001663_030 Hb_001663_030 Hb_000260_220--Hb_001663_030 Hb_016657_010 Hb_016657_010 Hb_000260_220--Hb_016657_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
79.3563 52.477 27.307 39.27 62.7725 73.5208
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.4589 41.4548 71.2723 66.7304 29.4597

CAGE analysis