Hb_010962_020

Information

Type transcription factor
Description TF Family: OFP
Location Contig10962: 21043-22227
Sequence    

Annotation

kegg
ID rcu:RCOM_0815310
description hypothetical protein
nr
ID XP_002518279.1
description hypothetical protein RCOM_0815310 [Ricinus communis]
swissprot
ID F4HNU8
description Transcription repressor OFP4 OS=Arabidopsis thaliana GN=OFP4 PE=1 SV=1
trembl
ID B9RX10
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0815310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02870: 21669-21887 , PASA_asmbl_02871: 21906-22172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010962_020 0.0 transcription factor TF Family: OFP hypothetical protein RCOM_0815310 [Ricinus communis]
2 Hb_001047_090 0.0479233616 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP16-like [Jatropha curcas]
3 Hb_002902_060 0.0557341522 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
4 Hb_001898_040 0.0712212399 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_001136_160 0.0747118066 - - catalytic, putative [Ricinus communis]
6 Hb_006846_040 0.078312885 - - PREDICTED: uncharacterized protein LOC105648687 [Jatropha curcas]
7 Hb_000003_280 0.0792823858 - - conserved hypothetical protein [Ricinus communis]
8 Hb_053264_010 0.0794886143 - - beta glucosidase [Hevea brasiliensis]
9 Hb_000103_450 0.0814765138 - - PREDICTED: dentin sialophosphoprotein-like [Jatropha curcas]
10 Hb_000392_110 0.0855885086 transcription factor TF Family: MYB r2r3-myb transcription factor, putative [Ricinus communis]
11 Hb_004202_020 0.0898010355 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010407_130 0.0908490512 - - hypothetical protein POPTR_0008s16680g [Populus trichocarpa]
13 Hb_001140_300 0.0917396448 - - PREDICTED: tubulin beta-1 chain [Cicer arietinum]
14 Hb_000140_320 0.1003277411 - - delta-8 sphingolipid desaturase [Vernicia fordii]
15 Hb_085962_010 0.102217791 - - hypothetical protein POPTR_0017s11380g [Populus trichocarpa]
16 Hb_001056_040 0.1039897339 - - hypothetical protein POPTR_0006s04450g [Populus trichocarpa]
17 Hb_007122_020 0.1040832179 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
18 Hb_000878_050 0.1058027286 - - PREDICTED: fasciclin-like arabinogalactan protein 17 [Jatropha curcas]
19 Hb_004435_020 0.1062794337 - - PREDICTED: tubulin alpha-2 chain [Jatropha curcas]
20 Hb_005542_120 0.1081071334 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 [Jatropha curcas]

Gene co-expression network

sample Hb_010962_020 Hb_010962_020 Hb_001047_090 Hb_001047_090 Hb_010962_020--Hb_001047_090 Hb_002902_060 Hb_002902_060 Hb_010962_020--Hb_002902_060 Hb_001898_040 Hb_001898_040 Hb_010962_020--Hb_001898_040 Hb_001136_160 Hb_001136_160 Hb_010962_020--Hb_001136_160 Hb_006846_040 Hb_006846_040 Hb_010962_020--Hb_006846_040 Hb_000003_280 Hb_000003_280 Hb_010962_020--Hb_000003_280 Hb_004202_020 Hb_004202_020 Hb_001047_090--Hb_004202_020 Hb_001047_090--Hb_002902_060 Hb_001047_090--Hb_006846_040 Hb_000103_450 Hb_000103_450 Hb_001047_090--Hb_000103_450 Hb_000392_110 Hb_000392_110 Hb_001047_090--Hb_000392_110 Hb_001709_120 Hb_001709_120 Hb_002902_060--Hb_001709_120 Hb_015292_020 Hb_015292_020 Hb_002902_060--Hb_015292_020 Hb_007122_020 Hb_007122_020 Hb_002902_060--Hb_007122_020 Hb_001975_110 Hb_001975_110 Hb_002902_060--Hb_001975_110 Hb_001898_040--Hb_001136_160 Hb_009783_010 Hb_009783_010 Hb_001898_040--Hb_009783_010 Hb_001136_040 Hb_001136_040 Hb_001898_040--Hb_001136_040 Hb_012132_050 Hb_012132_050 Hb_001898_040--Hb_012132_050 Hb_007185_050 Hb_007185_050 Hb_001898_040--Hb_007185_050 Hb_001136_160--Hb_001136_040 Hb_001136_160--Hb_009783_010 Hb_001136_160--Hb_007122_020 Hb_001136_160--Hb_012132_050 Hb_053264_010 Hb_053264_010 Hb_006846_040--Hb_053264_010 Hb_006846_040--Hb_000103_450 Hb_138585_010 Hb_138585_010 Hb_006846_040--Hb_138585_010 Hb_000903_040 Hb_000903_040 Hb_006846_040--Hb_000903_040 Hb_000878_050 Hb_000878_050 Hb_000003_280--Hb_000878_050 Hb_000003_280--Hb_053264_010 Hb_000003_280--Hb_000103_450 Hb_000003_280--Hb_001898_040 Hb_000003_280--Hb_006846_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.203833 1.99442 4.43462 0 0.0189718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.207699 1.47402

CAGE analysis