Hb_010962_030

Information

Type -
Description -
Location Contig10962: 25631-31401
Sequence    

Annotation

kegg
ID rcu:RCOM_0815420
description kinase, putative (EC:2.7.11.25)
nr
ID XP_002518280.1
description kinase, putative [Ricinus communis]
swissprot
ID Q9LVL5
description Probable serine/threonine-protein kinase WNK4 OS=Arabidopsis thaliana GN=WNK4 PE=1 SV=1
trembl
ID B9RX11
description Kinase, putative OS=Ricinus communis GN=RCOM_0815420 PE=4 SV=1
Gene Ontology
ID GO:0005634
description probable serine threonine-protein kinase wnk4 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02872: 25720-31176 , PASA_asmbl_02873: 26378-26567
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010962_030 0.0 - - kinase, putative [Ricinus communis]
2 Hb_007371_020 0.0805225974 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
3 Hb_021596_070 0.0885209147 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxy-D-xylulose 5-phosphate synthase [Hevea brasiliensis]
4 Hb_000146_110 0.1006892651 - - resveratrol/hydroxycinnamic acid O-glucosyltransferase [Vitis labrusca]
5 Hb_041290_030 0.1045598162 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
6 Hb_000003_620 0.1066472341 - - PREDICTED: ABC transporter G family member 29-like [Jatropha curcas]
7 Hb_009778_030 0.1124022858 transcription factor TF Family: TCP PREDICTED: transcription factor TCP23-like [Populus euphratica]
8 Hb_004712_140 0.1145839556 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
9 Hb_000123_310 0.1177124863 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
10 Hb_011054_030 0.1210590776 - - PREDICTED: uncharacterized protein LOC103324687 [Prunus mume]
11 Hb_008667_020 0.1245618707 - - PREDICTED: uncharacterized protein LOC101299609 [Fragaria vesca subsp. vesca]
12 Hb_010327_010 0.129774153 - - calcium ion binding protein, putative [Ricinus communis]
13 Hb_005054_300 0.1298996388 - - aquaporin [Hevea brasiliensis]
14 Hb_000039_100 0.1302920582 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
15 Hb_000333_120 0.1346416898 - - PREDICTED: thiol protease aleurain-like [Jatropha curcas]
16 Hb_002890_060 0.1370197798 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
17 Hb_001363_030 0.1380758948 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
18 Hb_000521_290 0.138459615 - - hypothetical protein POPTR_0001s23530g [Populus trichocarpa]
19 Hb_011925_010 0.1394010072 - - PREDICTED: putative disease resistance protein RGA1 isoform X1 [Jatropha curcas]
20 Hb_108055_010 0.140306059 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_010962_030 Hb_010962_030 Hb_007371_020 Hb_007371_020 Hb_010962_030--Hb_007371_020 Hb_021596_070 Hb_021596_070 Hb_010962_030--Hb_021596_070 Hb_000146_110 Hb_000146_110 Hb_010962_030--Hb_000146_110 Hb_041290_030 Hb_041290_030 Hb_010962_030--Hb_041290_030 Hb_000003_620 Hb_000003_620 Hb_010962_030--Hb_000003_620 Hb_009778_030 Hb_009778_030 Hb_010962_030--Hb_009778_030 Hb_007371_020--Hb_000003_620 Hb_007371_020--Hb_021596_070 Hb_007371_020--Hb_000146_110 Hb_007371_020--Hb_009778_030 Hb_010327_010 Hb_010327_010 Hb_007371_020--Hb_010327_010 Hb_008667_020 Hb_008667_020 Hb_021596_070--Hb_008667_020 Hb_007433_020 Hb_007433_020 Hb_021596_070--Hb_007433_020 Hb_011054_030 Hb_011054_030 Hb_021596_070--Hb_011054_030 Hb_111985_060 Hb_111985_060 Hb_021596_070--Hb_111985_060 Hb_000146_110--Hb_000003_620 Hb_000146_110--Hb_009778_030 Hb_002890_060 Hb_002890_060 Hb_000146_110--Hb_002890_060 Hb_000111_130 Hb_000111_130 Hb_000146_110--Hb_000111_130 Hb_000123_310 Hb_000123_310 Hb_000146_110--Hb_000123_310 Hb_004712_140 Hb_004712_140 Hb_041290_030--Hb_004712_140 Hb_041290_030--Hb_000123_310 Hb_006198_060 Hb_006198_060 Hb_041290_030--Hb_006198_060 Hb_006052_040 Hb_006052_040 Hb_041290_030--Hb_006052_040 Hb_041290_030--Hb_000146_110 Hb_000003_620--Hb_009778_030 Hb_000003_620--Hb_000111_130 Hb_001363_030 Hb_001363_030 Hb_000003_620--Hb_001363_030 Hb_001365_040 Hb_001365_040 Hb_000003_620--Hb_001365_040 Hb_009778_030--Hb_002890_060 Hb_009778_030--Hb_000111_130 Hb_009778_030--Hb_000123_310 Hb_009778_030--Hb_001363_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.186373 40.5853 3.8754 2.93993 0.129645 0.185951
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.432381 0.157972 0.0232216 7.69011 3.9106

CAGE analysis