Hb_010964_020

Information

Type -
Description -
Location Contig10964: 30214-30795
Sequence    

Annotation

kegg
ID smm:Smp_084690
description DEAD box ATP-dependent RNA helicase
nr
ID BAD94818.1
description RNA helicase [Arabidopsis thaliana]
swissprot
ID Q40469
description Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1
trembl
ID Q56ZB6
description RNA helicase (Fragment) OS=Arabidopsis thaliana GN=At3g19760 PE=2 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic initiation factor 4a-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02875: 29905-46378
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010964_020 0.0 - - RNA helicase [Arabidopsis thaliana]
2 Hb_178620_010 0.0891217212 - - ADP-ribosylation factor, arf, putative [Ricinus communis]
3 Hb_001623_300 0.1291069145 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
4 Hb_001623_290 0.136342128 - - unknown [Populus trichocarpa]
5 Hb_068569_010 0.1497111645 - - -
6 Hb_002192_090 0.1497984189 - - hypothetical protein AMTR_s00029p00055000 [Amborella trichopoda]
7 Hb_025905_020 0.1499939082 - - major allergen Pru ar 1-like [Jatropha curcas]
8 Hb_106415_010 0.1503619139 - - PREDICTED: snRNA-activating protein complex subunit isoform X1 [Jatropha curcas]
9 Hb_001518_070 0.1534119198 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000053_030 0.1552590019 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
11 Hb_183522_010 0.1568856685 - - Far upstream element-binding protein, putative [Ricinus communis]
12 Hb_000429_250 0.1653468607 - - hypothetical protein L484_000744 [Morus notabilis]
13 Hb_035436_010 0.1690344162 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
14 Hb_070469_010 0.1725703756 - - hypothetical protein POPTR_0002s21850g [Populus trichocarpa]
15 Hb_041025_010 0.1736529212 - - PREDICTED: uncharacterized protein LOC105635593 [Jatropha curcas]
16 Hb_142751_010 0.1757301996 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003371_170 0.1776355416 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004935_080 0.1786673711 - - AT3g13060/MGH6_17 [Arabidopsis thaliana]
19 Hb_114079_010 0.1803477708 - - hypothetical protein CICLE_v10008147mg [Citrus clementina]
20 Hb_099878_050 0.187355664 - - PREDICTED: uncharacterized protein LOC105123495 isoform X2 [Populus euphratica]

Gene co-expression network

sample Hb_010964_020 Hb_010964_020 Hb_178620_010 Hb_178620_010 Hb_010964_020--Hb_178620_010 Hb_001623_300 Hb_001623_300 Hb_010964_020--Hb_001623_300 Hb_001623_290 Hb_001623_290 Hb_010964_020--Hb_001623_290 Hb_068569_010 Hb_068569_010 Hb_010964_020--Hb_068569_010 Hb_002192_090 Hb_002192_090 Hb_010964_020--Hb_002192_090 Hb_025905_020 Hb_025905_020 Hb_010964_020--Hb_025905_020 Hb_178620_010--Hb_068569_010 Hb_178620_010--Hb_025905_020 Hb_002388_010 Hb_002388_010 Hb_178620_010--Hb_002388_010 Hb_013358_100 Hb_013358_100 Hb_178620_010--Hb_013358_100 Hb_178620_010--Hb_002192_090 Hb_001623_300--Hb_001623_290 Hb_000429_250 Hb_000429_250 Hb_001623_300--Hb_000429_250 Hb_006663_090 Hb_006663_090 Hb_001623_300--Hb_006663_090 Hb_106415_010 Hb_106415_010 Hb_001623_300--Hb_106415_010 Hb_142751_010 Hb_142751_010 Hb_001623_300--Hb_142751_010 Hb_001623_290--Hb_000429_250 Hb_112047_010 Hb_112047_010 Hb_001623_290--Hb_112047_010 Hb_001623_290--Hb_006663_090 Hb_002687_080 Hb_002687_080 Hb_001623_290--Hb_002687_080 Hb_068569_010--Hb_013358_100 Hb_000053_030 Hb_000053_030 Hb_068569_010--Hb_000053_030 Hb_065841_010 Hb_065841_010 Hb_068569_010--Hb_065841_010 Hb_033385_010 Hb_033385_010 Hb_068569_010--Hb_033385_010 Hb_133724_010 Hb_133724_010 Hb_002192_090--Hb_133724_010 Hb_001518_070 Hb_001518_070 Hb_002192_090--Hb_001518_070 Hb_002192_090--Hb_002388_010 Hb_001747_030 Hb_001747_030 Hb_002192_090--Hb_001747_030 Hb_002192_090--Hb_000053_030 Hb_099878_050 Hb_099878_050 Hb_002192_090--Hb_099878_050 Hb_134488_010 Hb_134488_010 Hb_025905_020--Hb_134488_010 Hb_114079_010 Hb_114079_010 Hb_025905_020--Hb_114079_010 Hb_035436_010 Hb_035436_010 Hb_025905_020--Hb_035436_010 Hb_041025_010 Hb_041025_010 Hb_025905_020--Hb_041025_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
135.786 75.6708 116.899 575.953 140.532 548.656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.5846 80.863 46.7622 36.4954 27.7585

CAGE analysis