Hb_010964_040

Information

Type -
Description -
Location Contig10964: 42243-46911
Sequence    

Annotation

kegg
ID rcu:RCOM_0807900
description dead box ATP-dependent RNA helicase, putative
nr
ID KHG11766.1
description Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
swissprot
ID P41380
description Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1
trembl
ID A0A0B0NL15
description Eukaryotic initiation factor 4A-3 OS=Gossypium arboreum GN=F383_01099 PE=4 SV=1
Gene Ontology
ID GO:0003743
description eukaryotic initiation factor 4a-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02875: 29905-46378
cDNA
(Sanger)
(ID:Location)		 028_O07.ab1: 45201-46347

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010964_040 0.0 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
2 Hb_007638_030 0.0556394653 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
3 Hb_004567_090 0.0670005022 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
4 Hb_001279_150 0.0670233948 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
5 Hb_000200_020 0.0675995113 - - PREDICTED: uncharacterized protein LOC105636907 [Jatropha curcas]
6 Hb_003750_050 0.0676068171 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
7 Hb_002481_080 0.0683137873 - - PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Jatropha curcas]
8 Hb_000140_280 0.0696280375 - - hypothetical protein B456_001G157900 [Gossypium raimondii]
9 Hb_007479_040 0.0696718523 - - conserved hypothetical protein [Ricinus communis]
10 Hb_028227_070 0.0703774981 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
11 Hb_000159_090 0.0708208636 - - hypothetical protein POPTR_0015s153201g, partial [Populus trichocarpa]
12 Hb_002110_190 0.0708639241 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
13 Hb_054865_150 0.071018575 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
14 Hb_000116_270 0.0714025602 - - PREDICTED: SRSF protein kinase 2-like [Jatropha curcas]
15 Hb_001314_050 0.073195443 - - PREDICTED: eukaryotic translation initiation factor 2 subunit alpha-like [Jatropha curcas]
16 Hb_000185_040 0.0747373677 - - PREDICTED: uncharacterized protein LOC103343434 [Prunus mume]
17 Hb_000035_180 0.0769091103 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 4 [Jatropha curcas]
18 Hb_012498_010 0.0773159359 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
19 Hb_005489_060 0.07821617 - - Anamorsin, putative [Ricinus communis]
20 Hb_002811_180 0.0789195581 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_010964_040 Hb_010964_040 Hb_007638_030 Hb_007638_030 Hb_010964_040--Hb_007638_030 Hb_004567_090 Hb_004567_090 Hb_010964_040--Hb_004567_090 Hb_001279_150 Hb_001279_150 Hb_010964_040--Hb_001279_150 Hb_000200_020 Hb_000200_020 Hb_010964_040--Hb_000200_020 Hb_003750_050 Hb_003750_050 Hb_010964_040--Hb_003750_050 Hb_002481_080 Hb_002481_080 Hb_010964_040--Hb_002481_080 Hb_000159_090 Hb_000159_090 Hb_007638_030--Hb_000159_090 Hb_000140_280 Hb_000140_280 Hb_007638_030--Hb_000140_280 Hb_000429_150 Hb_000429_150 Hb_007638_030--Hb_000429_150 Hb_007638_030--Hb_004567_090 Hb_002110_190 Hb_002110_190 Hb_007638_030--Hb_002110_190 Hb_004109_080 Hb_004109_080 Hb_004567_090--Hb_004109_080 Hb_004567_090--Hb_002110_190 Hb_007479_040 Hb_007479_040 Hb_004567_090--Hb_007479_040 Hb_012498_010 Hb_012498_010 Hb_004567_090--Hb_012498_010 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_054865_150 Hb_054865_150 Hb_004567_090--Hb_054865_150 Hb_001279_150--Hb_003750_050 Hb_000215_110 Hb_000215_110 Hb_001279_150--Hb_000215_110 Hb_005489_060 Hb_005489_060 Hb_001279_150--Hb_005489_060 Hb_007017_030 Hb_007017_030 Hb_001279_150--Hb_007017_030 Hb_000120_670 Hb_000120_670 Hb_001279_150--Hb_000120_670 Hb_002182_080 Hb_002182_080 Hb_001279_150--Hb_002182_080 Hb_000116_270 Hb_000116_270 Hb_000200_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_000200_020--Hb_000599_250 Hb_001366_370 Hb_001366_370 Hb_000200_020--Hb_001366_370 Hb_001159_130 Hb_001159_130 Hb_000200_020--Hb_001159_130 Hb_000783_010 Hb_000783_010 Hb_000200_020--Hb_000783_010 Hb_001218_030 Hb_001218_030 Hb_000200_020--Hb_001218_030 Hb_000156_010 Hb_000156_010 Hb_003750_050--Hb_000156_010 Hb_003750_050--Hb_000120_670 Hb_002811_180 Hb_002811_180 Hb_003750_050--Hb_002811_180 Hb_011037_030 Hb_011037_030 Hb_003750_050--Hb_011037_030 Hb_003750_050--Hb_054865_150 Hb_028227_070 Hb_028227_070 Hb_002481_080--Hb_028227_070 Hb_000028_180 Hb_000028_180 Hb_002481_080--Hb_000028_180 Hb_011485_070 Hb_011485_070 Hb_002481_080--Hb_011485_070 Hb_001016_120 Hb_001016_120 Hb_002481_080--Hb_001016_120 Hb_000645_090 Hb_000645_090 Hb_002481_080--Hb_000645_090 Hb_002000_080 Hb_002000_080 Hb_002481_080--Hb_002000_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.8764 37.264 38.7039 72.0975 44.8963 76.4212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.9172 67.9305 70.1347 73.2889 47.4546

CAGE analysis