Hb_010968_010

Information

Type -
Description -
Location Contig10968: 4911-8885
Sequence    

Annotation

kegg
ID tcc:TCM_005547
description Golgi snare 12 isoform 1
nr
ID XP_007052111.1
description Golgi snare 12 isoform 1 [Theobroma cacao]
swissprot
ID O22151
description Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2
trembl
ID A0A061E1Z0
description Golgi SNAP receptor complex member 1 OS=Theobroma cacao GN=TCM_005547 PE=3 SV=1
Gene Ontology
ID GO:0000139
description golgi snap receptor complex member 1-2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02882: 5020-8796
cDNA
(Sanger)
(ID:Location)		 026_H04.ab1: 5121-8729 , 049_B20.ab1: 5126-8729

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010968_010 0.0 - - Golgi snare 12 isoform 1 [Theobroma cacao]
2 Hb_000676_050 0.0625794988 - - PREDICTED: thioredoxin domain-containing protein PLP3B-like [Gossypium raimondii]
3 Hb_000205_120 0.0791132025 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]
4 Hb_002292_010 0.0893493721 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
5 Hb_001504_150 0.0896332828 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
6 Hb_002784_050 0.0897866146 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 [Jatropha curcas]
7 Hb_000920_280 0.0902203274 - - Protein SENSITIVITY TO RED LIGHT REDUCED, putative [Ricinus communis]
8 Hb_007007_050 0.0915915592 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Malus domestica]
9 Hb_005656_210 0.0916136661 - - PREDICTED: uncharacterized protein LOC105637440 [Jatropha curcas]
10 Hb_000666_110 0.0938793609 - - PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
11 Hb_008887_050 0.0962714747 - - PREDICTED: DNA-binding protein BIN4 [Jatropha curcas]
12 Hb_004447_030 0.097814764 - - PREDICTED: glucose-induced degradation protein 4 homolog [Jatropha curcas]
13 Hb_002639_150 0.1009949943 - - -
14 Hb_000012_020 0.1032157745 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
15 Hb_000297_110 0.1032276904 - - PREDICTED: uncharacterized protein LOC105634718 [Jatropha curcas]
16 Hb_000106_130 0.1044005303 - - unnamed protein product [Vitis vinifera]
17 Hb_019962_030 0.1059004999 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
18 Hb_000933_150 0.1061906385 - - PREDICTED: mitotic checkpoint protein BUB3.3 isoform X1 [Jatropha curcas]
19 Hb_000290_020 0.106460366 - - PREDICTED: eukaryotic translation initiation factor 3 subunit K-like isoform X2 [Populus euphratica]
20 Hb_006623_020 0.1073544183 - - PREDICTED: protein LURP-one-related 7 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_010968_010 Hb_010968_010 Hb_000676_050 Hb_000676_050 Hb_010968_010--Hb_000676_050 Hb_000205_120 Hb_000205_120 Hb_010968_010--Hb_000205_120 Hb_002292_010 Hb_002292_010 Hb_010968_010--Hb_002292_010 Hb_001504_150 Hb_001504_150 Hb_010968_010--Hb_001504_150 Hb_002784_050 Hb_002784_050 Hb_010968_010--Hb_002784_050 Hb_000920_280 Hb_000920_280 Hb_010968_010--Hb_000920_280 Hb_000676_050--Hb_002784_050 Hb_008887_050 Hb_008887_050 Hb_000676_050--Hb_008887_050 Hb_000933_150 Hb_000933_150 Hb_000676_050--Hb_000933_150 Hb_002639_150 Hb_002639_150 Hb_000676_050--Hb_002639_150 Hb_000676_050--Hb_000205_120 Hb_000529_080 Hb_000529_080 Hb_000205_120--Hb_000529_080 Hb_000265_150 Hb_000265_150 Hb_000205_120--Hb_000265_150 Hb_004447_030 Hb_004447_030 Hb_000205_120--Hb_004447_030 Hb_000205_120--Hb_008887_050 Hb_000976_270 Hb_000976_270 Hb_000205_120--Hb_000976_270 Hb_007007_050 Hb_007007_050 Hb_002292_010--Hb_007007_050 Hb_004363_010 Hb_004363_010 Hb_002292_010--Hb_004363_010 Hb_141532_010 Hb_141532_010 Hb_002292_010--Hb_141532_010 Hb_001135_020 Hb_001135_020 Hb_002292_010--Hb_001135_020 Hb_002292_010--Hb_002639_150 Hb_003687_230 Hb_003687_230 Hb_002292_010--Hb_003687_230 Hb_000666_110 Hb_000666_110 Hb_001504_150--Hb_000666_110 Hb_005701_040 Hb_005701_040 Hb_001504_150--Hb_005701_040 Hb_019962_030 Hb_019962_030 Hb_001504_150--Hb_019962_030 Hb_007164_020 Hb_007164_020 Hb_001504_150--Hb_007164_020 Hb_001504_150--Hb_000205_120 Hb_000085_240 Hb_000085_240 Hb_001504_150--Hb_000085_240 Hb_022250_030 Hb_022250_030 Hb_002784_050--Hb_022250_030 Hb_002685_140 Hb_002685_140 Hb_002784_050--Hb_002685_140 Hb_001635_170 Hb_001635_170 Hb_002784_050--Hb_001635_170 Hb_002784_050--Hb_019962_030 Hb_000327_120 Hb_000327_120 Hb_002784_050--Hb_000327_120 Hb_006623_020 Hb_006623_020 Hb_000920_280--Hb_006623_020 Hb_003091_010 Hb_003091_010 Hb_000920_280--Hb_003091_010 Hb_000211_110 Hb_000211_110 Hb_000920_280--Hb_000211_110 Hb_000923_040 Hb_000923_040 Hb_000920_280--Hb_000923_040 Hb_003142_070 Hb_003142_070 Hb_000920_280--Hb_003142_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
73.2562 18.5882 38.7935 24.6853 67.2316 45.1981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
43.4144 37.6449 22.4552 12.3154 6.2425

CAGE analysis