Hb_010968_030

Information

Type -
Description -
Location Contig10968: 25856-26362
Sequence    

Annotation

kegg
ID rcu:RCOM_1611000
description Auxin-induced protein X10A, putative
nr
ID XP_012083611.1
description PREDICTED: uncharacterized protein LOC105643149 [Jatropha curcas]
swissprot
ID O22150
description Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana GN=SAUR36 PE=2 SV=1
trembl
ID A0A067JY38
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14553 PE=4 SV=1
Gene Ontology
ID GO:0009862
description auxin-induced protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02884: 25515-26438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010968_030 0.0 - - PREDICTED: uncharacterized protein LOC105643149 [Jatropha curcas]
2 Hb_000392_540 0.0953961277 - - PREDICTED: hypersensitive-induced response protein 1 [Sesamum indicum]
3 Hb_000367_080 0.1150247284 - - PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Jatropha curcas]
4 Hb_009222_080 0.1231409678 - - RING-H2 finger protein ATL2J, putative [Ricinus communis]
5 Hb_001008_080 0.1357126137 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
6 Hb_011224_150 0.1371360044 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
7 Hb_001195_380 0.1376234145 - - PREDICTED: uncharacterized protein LOC105633781 [Jatropha curcas]
8 Hb_006916_140 0.1451786331 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like [Jatropha curcas]
9 Hb_002495_030 0.1489849173 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
10 Hb_001269_580 0.1511477302 - - PREDICTED: shikimate O-hydroxycinnamoyltransferase [Jatropha curcas]
11 Hb_002890_110 0.1512862562 - - PREDICTED: protein NRT1/ PTR FAMILY 4.3 [Jatropha curcas]
12 Hb_174541_030 0.1515402218 - - Cytochrome P450, family 98, subfamily A, polypeptide 3 [Theobroma cacao]
13 Hb_098795_030 0.1535793628 - - PREDICTED: metal tolerance protein 1-like [Vitis vinifera]
14 Hb_005539_140 0.1540272629 - - PREDICTED: U-box domain-containing protein 19-like [Jatropha curcas]
15 Hb_002097_080 0.157264429 - - phosphatidylinositol-4-phosphate 5-kinase, putative [Ricinus communis]
16 Hb_000457_120 0.1579786099 - - PREDICTED: death-associated protein kinase dapk-1 [Jatropha curcas]
17 Hb_003470_110 0.1581769854 - - unnamed protein product [Vitis vinifera]
18 Hb_000251_120 0.15883812 - - O-acetyltransferase, putative [Ricinus communis]
19 Hb_005329_030 0.1598665118 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
20 Hb_000928_200 0.1633035197 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]

Gene co-expression network

sample Hb_010968_030 Hb_010968_030 Hb_000392_540 Hb_000392_540 Hb_010968_030--Hb_000392_540 Hb_000367_080 Hb_000367_080 Hb_010968_030--Hb_000367_080 Hb_009222_080 Hb_009222_080 Hb_010968_030--Hb_009222_080 Hb_001008_080 Hb_001008_080 Hb_010968_030--Hb_001008_080 Hb_011224_150 Hb_011224_150 Hb_010968_030--Hb_011224_150 Hb_001195_380 Hb_001195_380 Hb_010968_030--Hb_001195_380 Hb_000392_540--Hb_011224_150 Hb_000251_120 Hb_000251_120 Hb_000392_540--Hb_000251_120 Hb_000392_540--Hb_000367_080 Hb_004957_050 Hb_004957_050 Hb_000392_540--Hb_004957_050 Hb_002890_110 Hb_002890_110 Hb_000392_540--Hb_002890_110 Hb_000928_200 Hb_000928_200 Hb_000367_080--Hb_000928_200 Hb_000367_080--Hb_011224_150 Hb_000856_030 Hb_000856_030 Hb_000367_080--Hb_000856_030 Hb_000367_080--Hb_000251_120 Hb_002685_220 Hb_002685_220 Hb_009222_080--Hb_002685_220 Hb_006916_140 Hb_006916_140 Hb_009222_080--Hb_006916_140 Hb_005725_160 Hb_005725_160 Hb_009222_080--Hb_005725_160 Hb_005329_030 Hb_005329_030 Hb_009222_080--Hb_005329_030 Hb_000245_100 Hb_000245_100 Hb_009222_080--Hb_000245_100 Hb_002495_030 Hb_002495_030 Hb_001008_080--Hb_002495_030 Hb_000003_580 Hb_000003_580 Hb_001008_080--Hb_000003_580 Hb_006750_010 Hb_006750_010 Hb_001008_080--Hb_006750_010 Hb_020378_020 Hb_020378_020 Hb_001008_080--Hb_020378_020 Hb_001008_080--Hb_001195_380 Hb_003086_030 Hb_003086_030 Hb_001008_080--Hb_003086_030 Hb_000080_100 Hb_000080_100 Hb_011224_150--Hb_000080_100 Hb_011224_150--Hb_002890_110 Hb_011224_150--Hb_000856_030 Hb_000009_250 Hb_000009_250 Hb_011224_150--Hb_000009_250 Hb_000580_110 Hb_000580_110 Hb_001195_380--Hb_000580_110 Hb_001195_380--Hb_006750_010 Hb_001195_380--Hb_000251_120 Hb_001195_380--Hb_002495_030 Hb_002596_080 Hb_002596_080 Hb_001195_380--Hb_002596_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.1843 29.1494 9.29607 98.6025 0.972186 1.0709
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.93588 2.5768 2.97684 17.6739 61.0764

CAGE analysis