Hb_010978_020

Information

Type transcription factor
Description TF Family: MIKC
Location Contig10978: 25841-29029
Sequence    

Annotation

kegg
ID rcu:RCOM_1030190
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_012077413.1
description PREDICTED: agamous-like MADS-box protein AGL12 [Jatropha curcas]
swissprot
ID Q38841
description Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2
trembl
ID A0A067LB56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17244 PE=4 SV=1
Gene Ontology
ID GO:0005634
description agamous-like mads-box protein agl12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02911: 27390-28620
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010978_020 0.0 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL12 [Jatropha curcas]
2 Hb_002986_030 0.0932763866 - - hypothetical protein JCGZ_12380 [Jatropha curcas]
3 Hb_001902_040 0.0973288679 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000083_220 0.1109775547 - - -
5 Hb_000031_210 0.1130585043 - - cytochrome P450, putative [Ricinus communis]
6 Hb_005066_040 0.1134747523 - - Reticuline oxidase precursor, putative [Ricinus communis]
7 Hb_000749_300 0.1197111611 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
8 Hb_005843_010 0.1229302419 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
9 Hb_000462_010 0.1265673177 - - hypothetical protein VITISV_041696 [Vitis vinifera]
10 Hb_001514_050 0.1296133414 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
11 Hb_000271_130 0.1320574777 transcription factor TF Family: C2C2-Dof DNA binding with one finger 2.4, putative [Theobroma cacao]
12 Hb_009315_010 0.135947087 - - hypothetical protein POPTR_1763s00200g, partial [Populus trichocarpa]
13 Hb_005678_020 0.1371363952 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_001500_130 0.1382273313 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
15 Hb_000708_020 0.1386149475 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
16 Hb_000661_270 0.1390737418 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
17 Hb_036790_110 0.139357963 - - hypothetical protein JCGZ_22271 [Jatropha curcas]
18 Hb_189208_040 0.1418531652 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
19 Hb_001296_060 0.1420900952 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
20 Hb_005010_030 0.1421772861 - - PREDICTED: lecithin-cholesterol acyltransferase-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_010978_020 Hb_010978_020 Hb_002986_030 Hb_002986_030 Hb_010978_020--Hb_002986_030 Hb_001902_040 Hb_001902_040 Hb_010978_020--Hb_001902_040 Hb_000083_220 Hb_000083_220 Hb_010978_020--Hb_000083_220 Hb_000031_210 Hb_000031_210 Hb_010978_020--Hb_000031_210 Hb_005066_040 Hb_005066_040 Hb_010978_020--Hb_005066_040 Hb_000749_300 Hb_000749_300 Hb_010978_020--Hb_000749_300 Hb_002986_030--Hb_001902_040 Hb_002986_030--Hb_000749_300 Hb_015934_090 Hb_015934_090 Hb_002986_030--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_002986_030--Hb_003032_030 Hb_001206_100 Hb_001206_100 Hb_002986_030--Hb_001206_100 Hb_001902_040--Hb_000749_300 Hb_008689_010 Hb_008689_010 Hb_001902_040--Hb_008689_010 Hb_001902_040--Hb_015934_090 Hb_185726_010 Hb_185726_010 Hb_001902_040--Hb_185726_010 Hb_000083_220--Hb_000031_210 Hb_001006_110 Hb_001006_110 Hb_000083_220--Hb_001006_110 Hb_000083_220--Hb_002986_030 Hb_001296_060 Hb_001296_060 Hb_000083_220--Hb_001296_060 Hb_000061_450 Hb_000061_450 Hb_000083_220--Hb_000061_450 Hb_000031_210--Hb_001006_110 Hb_000031_210--Hb_001296_060 Hb_001999_070 Hb_001999_070 Hb_000031_210--Hb_001999_070 Hb_000031_210--Hb_002986_030 Hb_005843_010 Hb_005843_010 Hb_005066_040--Hb_005843_010 Hb_009315_010 Hb_009315_010 Hb_005066_040--Hb_009315_010 Hb_022092_070 Hb_022092_070 Hb_005066_040--Hb_022092_070 Hb_002119_150 Hb_002119_150 Hb_005066_040--Hb_002119_150 Hb_008518_060 Hb_008518_060 Hb_005066_040--Hb_008518_060 Hb_000739_280 Hb_000739_280 Hb_005066_040--Hb_000739_280 Hb_000083_210 Hb_000083_210 Hb_000749_300--Hb_000083_210 Hb_000749_300--Hb_185726_010 Hb_000462_010 Hb_000462_010 Hb_000749_300--Hb_000462_010 Hb_000749_300--Hb_015934_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.418655 0.559922 1.78032 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.109972 0 0 0.0355675 2.31911

CAGE analysis