Hb_010984_010

Information

Type -
Description -
Location Contig10984: 31366-55087
Sequence    

Annotation

kegg
ID rcu:RCOM_1767360
description GTP-binding protein lepa, putative
nr
ID XP_012079796.1
description PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID B9RHQ5
description Translation factor GUF1 homolog, chloroplastic OS=Ricinus communis GN=RCOM_1767360 PE=3 SV=1
trembl
ID A0A067K5K4
description Translation factor GUF1 homolog, chloroplastic OS=Jatropha curcas GN=JCGZ_15356 PE=3 SV=1
Gene Ontology
ID GO:0005743
description translation factor guf1 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02920: 39801-46537 , PASA_asmbl_02921: 39829-40165 , PASA_asmbl_02922: 49274-49728 , PASA_asmbl_02924: 47911-74688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010984_010 0.0 - - PREDICTED: translation factor GUF1 homolog, chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000803_220 0.0776817539 - - PREDICTED: magnesium-chelatase subunit ChlD, chloroplastic [Jatropha curcas]
3 Hb_008616_040 0.0855662724 - - PREDICTED: RNA-binding protein CP33, chloroplastic [Jatropha curcas]
4 Hb_000803_240 0.088596881 - - hypothetical protein CICLE_v100143612mg, partial [Citrus clementina]
5 Hb_007576_180 0.0892716948 - - PREDICTED: probable protein phosphatase 2C 62 isoform X5 [Jatropha curcas]
6 Hb_018043_020 0.0939392183 - - PREDICTED: pentatricopeptide repeat-containing protein MRL1, chloroplastic [Jatropha curcas]
7 Hb_016760_010 0.0952467651 - - ABC transporter family protein [Hevea brasiliensis]
8 Hb_001250_020 0.0977772006 - - PREDICTED: CRS2-associated factor 2, chloroplastic [Jatropha curcas]
9 Hb_003029_140 0.1012536264 - - PREDICTED: pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Jatropha curcas]
10 Hb_002740_190 0.1031673894 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
11 Hb_006916_030 0.1062648862 - - PREDICTED: uncharacterized protein LOC105646760 [Jatropha curcas]
12 Hb_159809_090 0.1097738326 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Hevea brasiliensis]
13 Hb_001425_010 0.1098360227 - - sugar transporter, putative [Ricinus communis]
14 Hb_021409_190 0.113369116 - - PREDICTED: luminal-binding protein 5-like [Jatropha curcas]
15 Hb_001109_160 0.1148456231 - - DNA binding protein, putative [Ricinus communis]
16 Hb_010757_030 0.1156963075 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_002783_070 0.1157582402 - - PREDICTED: endoplasmin homolog [Jatropha curcas]
18 Hb_001437_120 0.1165491453 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
19 Hb_028707_110 0.1174226546 - - PREDICTED: uncharacterized protein LOC105645798 [Jatropha curcas]
20 Hb_164926_010 0.1179320393 - - Granule-bound starch synthase 1, chloroplastic/amyloplastic [Gossypium arboreum]

Gene co-expression network

sample Hb_010984_010 Hb_010984_010 Hb_000803_220 Hb_000803_220 Hb_010984_010--Hb_000803_220 Hb_008616_040 Hb_008616_040 Hb_010984_010--Hb_008616_040 Hb_000803_240 Hb_000803_240 Hb_010984_010--Hb_000803_240 Hb_007576_180 Hb_007576_180 Hb_010984_010--Hb_007576_180 Hb_018043_020 Hb_018043_020 Hb_010984_010--Hb_018043_020 Hb_016760_010 Hb_016760_010 Hb_010984_010--Hb_016760_010 Hb_000803_220--Hb_007576_180 Hb_164926_010 Hb_164926_010 Hb_000803_220--Hb_164926_010 Hb_000803_220--Hb_000803_240 Hb_001425_010 Hb_001425_010 Hb_000803_220--Hb_001425_010 Hb_000803_220--Hb_018043_020 Hb_008616_040--Hb_018043_020 Hb_001250_020 Hb_001250_020 Hb_008616_040--Hb_001250_020 Hb_003029_140 Hb_003029_140 Hb_008616_040--Hb_003029_140 Hb_000976_130 Hb_000976_130 Hb_008616_040--Hb_000976_130 Hb_021409_190 Hb_021409_190 Hb_008616_040--Hb_021409_190 Hb_001723_030 Hb_001723_030 Hb_000803_240--Hb_001723_030 Hb_014361_110 Hb_014361_110 Hb_000803_240--Hb_014361_110 Hb_002740_190 Hb_002740_190 Hb_000803_240--Hb_002740_190 Hb_002217_140 Hb_002217_140 Hb_000803_240--Hb_002217_140 Hb_166127_030 Hb_166127_030 Hb_000803_240--Hb_166127_030 Hb_004629_030 Hb_004629_030 Hb_007576_180--Hb_004629_030 Hb_004837_020 Hb_004837_020 Hb_007576_180--Hb_004837_020 Hb_007576_180--Hb_001425_010 Hb_007576_180--Hb_018043_020 Hb_018043_020--Hb_003029_140 Hb_159809_090 Hb_159809_090 Hb_018043_020--Hb_159809_090 Hb_018043_020--Hb_001250_020 Hb_018043_020--Hb_001425_010 Hb_018043_020--Hb_004629_030 Hb_001009_260 Hb_001009_260 Hb_016760_010--Hb_001009_260 Hb_003142_010 Hb_003142_010 Hb_016760_010--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_016760_010--Hb_001080_070 Hb_010344_030 Hb_010344_030 Hb_016760_010--Hb_010344_030 Hb_010757_030 Hb_010757_030 Hb_016760_010--Hb_010757_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.26005 6.06073 12.5461 8.95346 5.22957 5.76522
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.44608 1.99239 1.9192 8.767 32.2059

CAGE analysis