Hb_010984_020

Information

Type -
Description -
Location Contig10984: 65811-68758
Sequence    

Annotation

kegg
ID gmx:100781157
description translation factor GUF1 homolog, chloroplastic-like
nr
ID KHN01865.1
description Translation factor GUF1 like, chloroplastic [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2NXU1
description Translation factor GUF1 like, chloroplastic OS=Glycine soja GN=glysoja_038960 PE=4 SV=1
Gene Ontology
ID GO:0005743
description translation factor guf1 chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02924: 47911-74688
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010984_020 0.0 - - Translation factor GUF1 like, chloroplastic [Glycine soja]
2 Hb_000977_290 0.07680546 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
3 Hb_007192_020 0.0817477238 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
4 Hb_006006_060 0.0976451243 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
5 Hb_004710_020 0.1111695907 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
6 Hb_000959_300 0.1141420626 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
7 Hb_000510_150 0.1161343925 - - PREDICTED: magnesium transporter MRS2-I-like isoform X1 [Jatropha curcas]
8 Hb_000300_090 0.1166238276 - - catalytic, putative [Ricinus communis]
9 Hb_002053_050 0.1187675371 - - Kinesin heavy chain, putative [Ricinus communis]
10 Hb_002942_230 0.1209966578 - - PREDICTED: long chain base biosynthesis protein 2a [Populus euphratica]
11 Hb_000664_020 0.1233064974 - - tryptophanyl-tRNA synthetase, putative [Ricinus communis]
12 Hb_000860_060 0.1279907016 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 6 [Jatropha curcas]
13 Hb_010344_030 0.1282694659 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001140_180 0.1303524718 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
15 Hb_000629_070 0.1304228828 - - DNA-3-methyladenine glycosylase, putative [Ricinus communis]
16 Hb_002249_080 0.1311111378 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
17 Hb_000815_230 0.1314570167 - - conserved hypothetical protein [Ricinus communis]
18 Hb_073973_120 0.1331561523 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000866_070 0.1340128173 - - PREDICTED: LOW QUALITY PROTEIN: SKP1-like protein 21 [Jatropha curcas]
20 Hb_000684_310 0.1353036162 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 [Jatropha curcas]

Gene co-expression network

sample Hb_010984_020 Hb_010984_020 Hb_000977_290 Hb_000977_290 Hb_010984_020--Hb_000977_290 Hb_007192_020 Hb_007192_020 Hb_010984_020--Hb_007192_020 Hb_006006_060 Hb_006006_060 Hb_010984_020--Hb_006006_060 Hb_004710_020 Hb_004710_020 Hb_010984_020--Hb_004710_020 Hb_000959_300 Hb_000959_300 Hb_010984_020--Hb_000959_300 Hb_000510_150 Hb_000510_150 Hb_010984_020--Hb_000510_150 Hb_000977_290--Hb_000959_300 Hb_000977_290--Hb_007192_020 Hb_002488_010 Hb_002488_010 Hb_000977_290--Hb_002488_010 Hb_000977_290--Hb_004710_020 Hb_001140_180 Hb_001140_180 Hb_000977_290--Hb_001140_180 Hb_000094_290 Hb_000094_290 Hb_007192_020--Hb_000094_290 Hb_007192_020--Hb_000959_300 Hb_000300_090 Hb_000300_090 Hb_007192_020--Hb_000300_090 Hb_009913_040 Hb_009913_040 Hb_007192_020--Hb_009913_040 Hb_000200_350 Hb_000200_350 Hb_006006_060--Hb_000200_350 Hb_022693_130 Hb_022693_130 Hb_006006_060--Hb_022693_130 Hb_000388_150 Hb_000388_150 Hb_006006_060--Hb_000388_150 Hb_010344_030 Hb_010344_030 Hb_006006_060--Hb_010344_030 Hb_011926_040 Hb_011926_040 Hb_006006_060--Hb_011926_040 Hb_000496_130 Hb_000496_130 Hb_004710_020--Hb_000496_130 Hb_000085_070 Hb_000085_070 Hb_004710_020--Hb_000085_070 Hb_000454_100 Hb_000454_100 Hb_004710_020--Hb_000454_100 Hb_002828_060 Hb_002828_060 Hb_004710_020--Hb_002828_060 Hb_004710_020--Hb_006006_060 Hb_001348_090 Hb_001348_090 Hb_004710_020--Hb_001348_090 Hb_000959_300--Hb_002488_010 Hb_001411_130 Hb_001411_130 Hb_000959_300--Hb_001411_130 Hb_001969_140 Hb_001969_140 Hb_000959_300--Hb_001969_140 Hb_002942_230 Hb_002942_230 Hb_000959_300--Hb_002942_230 Hb_003847_040 Hb_003847_040 Hb_000959_300--Hb_003847_040 Hb_000167_040 Hb_000167_040 Hb_000959_300--Hb_000167_040 Hb_002301_030 Hb_002301_030 Hb_000510_150--Hb_002301_030 Hb_000035_220 Hb_000035_220 Hb_000510_150--Hb_000035_220 Hb_000342_170 Hb_000342_170 Hb_000510_150--Hb_000342_170 Hb_000665_170 Hb_000665_170 Hb_000510_150--Hb_000665_170 Hb_003540_080 Hb_003540_080 Hb_000510_150--Hb_003540_080 Hb_000510_150--Hb_002942_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1219 13.4094 33.3522 53.5011 9.89077 24.0938
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.21329 6.24441 3.88517 21.0113 52.4295

CAGE analysis