Hb_010997_020

Information

Type -
Description -
Location Contig10997: 13311-16566
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010997_020 0.0 - - -
2 Hb_003081_030 0.2114074847 - - PREDICTED: uncharacterized protein LOC101256381 [Solanum lycopersicum]
3 Hb_000563_270 0.2444240222 - - -
4 Hb_000529_250 0.2729858889 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
5 Hb_171469_010 0.273925449 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
6 Hb_007403_090 0.2742561071 - - -
7 Hb_165739_010 0.2984476216 - - DNA binding protein, putative [Ricinus communis]
8 Hb_001792_080 0.3061834032 - - unknown [Populus trichocarpa]
9 Hb_007532_040 0.3116455219 - - -
10 Hb_017895_030 0.3132746147 transcription factor TF Family: C2H2 -
11 Hb_000684_160 0.31521793 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
12 Hb_037373_010 0.3222275851 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
13 Hb_000310_030 0.3238396655 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
14 Hb_001221_510 0.3239936043 - - Protein HVA22, putative [Ricinus communis]
15 Hb_003602_050 0.3271618222 - - zinc binding dehydrogenase, putative [Ricinus communis]
16 Hb_000012_460 0.3293692616 - - unknown [Populus trichocarpa]
17 Hb_034579_030 0.3295633019 - - -
18 Hb_001604_050 0.3318898879 - - PREDICTED: uncharacterized protein LOC105639208 [Jatropha curcas]
19 Hb_001481_180 0.3332149695 - - plasma membrane H+-ATPase [Hevea brasiliensis]
20 Hb_000738_010 0.3335996644 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]

Gene co-expression network

sample Hb_010997_020 Hb_010997_020 Hb_003081_030 Hb_003081_030 Hb_010997_020--Hb_003081_030 Hb_000563_270 Hb_000563_270 Hb_010997_020--Hb_000563_270 Hb_000529_250 Hb_000529_250 Hb_010997_020--Hb_000529_250 Hb_171469_010 Hb_171469_010 Hb_010997_020--Hb_171469_010 Hb_007403_090 Hb_007403_090 Hb_010997_020--Hb_007403_090 Hb_165739_010 Hb_165739_010 Hb_010997_020--Hb_165739_010 Hb_003081_030--Hb_000529_250 Hb_003602_050 Hb_003602_050 Hb_003081_030--Hb_003602_050 Hb_007108_020 Hb_007108_020 Hb_003081_030--Hb_007108_020 Hb_003081_030--Hb_000563_270 Hb_000012_460 Hb_000012_460 Hb_003081_030--Hb_000012_460 Hb_000563_270--Hb_003602_050 Hb_000348_040 Hb_000348_040 Hb_000563_270--Hb_000348_040 Hb_000847_140 Hb_000847_140 Hb_000563_270--Hb_000847_140 Hb_015091_010 Hb_015091_010 Hb_000563_270--Hb_015091_010 Hb_063511_010 Hb_063511_010 Hb_000563_270--Hb_063511_010 Hb_017895_030 Hb_017895_030 Hb_000529_250--Hb_017895_030 Hb_001047_130 Hb_001047_130 Hb_000529_250--Hb_001047_130 Hb_001357_130 Hb_001357_130 Hb_000529_250--Hb_001357_130 Hb_000310_030 Hb_000310_030 Hb_000529_250--Hb_000310_030 Hb_004965_070 Hb_004965_070 Hb_000529_250--Hb_004965_070 Hb_001604_050 Hb_001604_050 Hb_171469_010--Hb_001604_050 Hb_001047_160 Hb_001047_160 Hb_171469_010--Hb_001047_160 Hb_021888_070 Hb_021888_070 Hb_171469_010--Hb_021888_070 Hb_009838_010 Hb_009838_010 Hb_171469_010--Hb_009838_010 Hb_000853_410 Hb_000853_410 Hb_171469_010--Hb_000853_410 Hb_000169_140 Hb_000169_140 Hb_171469_010--Hb_000169_140 Hb_034579_030 Hb_034579_030 Hb_007403_090--Hb_034579_030 Hb_005656_050 Hb_005656_050 Hb_007403_090--Hb_005656_050 Hb_001173_040 Hb_001173_040 Hb_007403_090--Hb_001173_040 Hb_002539_090 Hb_002539_090 Hb_007403_090--Hb_002539_090 Hb_001008_010 Hb_001008_010 Hb_007403_090--Hb_001008_010 Hb_004448_020 Hb_004448_020 Hb_007403_090--Hb_004448_020 Hb_000630_040 Hb_000630_040 Hb_165739_010--Hb_000630_040 Hb_002054_010 Hb_002054_010 Hb_165739_010--Hb_002054_010 Hb_165739_010--Hb_000310_030 Hb_092100_020 Hb_092100_020 Hb_165739_010--Hb_092100_020 Hb_165739_010--Hb_004448_020 Hb_165739_010--Hb_000529_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0262272 0.199587
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.321438 0.151655 0.0917435 0 0.10184

CAGE analysis