Hb_010997_050

Information

Type transcription factor
Description TF Family: mTERF
Location Contig10997: 21949-22467
Sequence    

Annotation

kegg
ID mus:103989560
description uncharacterized protein LOC103989560
nr
ID CDP16008.1
description unnamed protein product [Coffea canephora]
swissprot
ID -
description -
trembl
ID A0A068V7W3
description Coffea canephora DH200=94 genomic scaffold, scaffold_113 OS=Coffea canephora GN=GSCOC_T00016966001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010997_050 0.0 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
2 Hb_098842_010 0.0508676674 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
3 Hb_105484_010 0.1268161198 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
4 Hb_000004_140 0.1370798793 - - -
5 Hb_076583_010 0.1400707828 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
6 Hb_064951_010 0.1427845211 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
7 Hb_004282_030 0.1598150638 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
8 Hb_003636_050 0.1994423928 - - PREDICTED: bark storage protein A-like [Populus euphratica]
9 Hb_000563_280 0.2018170712 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
10 Hb_086287_020 0.2116942418 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
11 Hb_111332_010 0.2162428708 - - Dihydroneopterin aldolase [Morus notabilis]
12 Hb_105480_010 0.2168268335 - - -
13 Hb_128173_010 0.2174520656 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
14 Hb_007761_010 0.2177502002 - - -
15 Hb_005542_020 0.2197642949 - - lupus la ribonucleoprotein, putative [Ricinus communis]
16 Hb_066784_020 0.2214673393 - - conserved hypothetical protein [Ricinus communis]
17 Hb_124567_010 0.2241578437 - - -
18 Hb_013727_010 0.2317824439 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
19 Hb_000115_270 0.2402926576 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
20 Hb_182310_010 0.2408456623 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_010997_050 Hb_010997_050 Hb_098842_010 Hb_098842_010 Hb_010997_050--Hb_098842_010 Hb_105484_010 Hb_105484_010 Hb_010997_050--Hb_105484_010 Hb_000004_140 Hb_000004_140 Hb_010997_050--Hb_000004_140 Hb_076583_010 Hb_076583_010 Hb_010997_050--Hb_076583_010 Hb_064951_010 Hb_064951_010 Hb_010997_050--Hb_064951_010 Hb_004282_030 Hb_004282_030 Hb_010997_050--Hb_004282_030 Hb_098842_010--Hb_105484_010 Hb_098842_010--Hb_000004_140 Hb_098842_010--Hb_004282_030 Hb_098842_010--Hb_076583_010 Hb_098842_010--Hb_064951_010 Hb_000563_280 Hb_000563_280 Hb_105484_010--Hb_000563_280 Hb_000831_040 Hb_000831_040 Hb_105484_010--Hb_000831_040 Hb_182310_010 Hb_182310_010 Hb_105484_010--Hb_182310_010 Hb_165078_010 Hb_165078_010 Hb_105484_010--Hb_165078_010 Hb_000004_140--Hb_004282_030 Hb_000004_140--Hb_076583_010 Hb_128173_010 Hb_128173_010 Hb_000004_140--Hb_128173_010 Hb_007761_010 Hb_007761_010 Hb_000004_140--Hb_007761_010 Hb_076583_010--Hb_064951_010 Hb_009268_110 Hb_009268_110 Hb_076583_010--Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_076583_010--Hb_089491_010 Hb_013727_010 Hb_013727_010 Hb_076583_010--Hb_013727_010 Hb_003529_210 Hb_003529_210 Hb_076583_010--Hb_003529_210 Hb_066784_020 Hb_066784_020 Hb_064951_010--Hb_066784_020 Hb_064951_010--Hb_003529_210 Hb_064951_010--Hb_089491_010 Hb_064951_010--Hb_009268_110 Hb_004829_020 Hb_004829_020 Hb_004282_030--Hb_004829_020 Hb_012340_040 Hb_012340_040 Hb_004282_030--Hb_012340_040 Hb_124567_010 Hb_124567_010 Hb_004282_030--Hb_124567_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.420938 0 0 0 0.605732 3.62879
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis