Hb_010997_080

Information

Type transcription factor
Description TF Family: mTERF
Location Contig10997: 47751-82719
Sequence    

Annotation

kegg
ID rcu:RCOM_0454380
description hypothetical protein
nr
ID CBI37155.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HZN0
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0005g03870 PE=4 SV=1
Gene Ontology
ID GO:0097159
description rna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02930: 55225-56018 , PASA_asmbl_02932: 61233-62069 , PASA_asmbl_02934: 64065-64309 , PASA_asmbl_02935: 64852-65096 , PASA_asmbl_02936: 67150-70978 , PASA_asmbl_02937: 69564-69841
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010997_080 0.0 transcription factor TF Family: mTERF unnamed protein product [Vitis vinifera]
2 Hb_002205_110 0.062452921 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000441_140 0.0629515169 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]
4 Hb_000028_370 0.069107651 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
5 Hb_000173_490 0.0754477167 - - PREDICTED: F-box/LRR-repeat protein 4 isoform X2 [Jatropha curcas]
6 Hb_003389_040 0.0787288081 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
7 Hb_005048_130 0.0793106364 - - hypothetical protein POPTR_0004s03700g [Populus trichocarpa]
8 Hb_001408_040 0.0799902388 - - PREDICTED: MACPF domain-containing protein At4g24290 isoform X2 [Jatropha curcas]
9 Hb_000357_110 0.0800764825 - - PREDICTED: uncharacterized protein LOC105643970 isoform X2 [Jatropha curcas]
10 Hb_005291_030 0.0803118968 transcription factor TF Family: SWI/SNF-BAF60b brg-1 associated factor, putative [Ricinus communis]
11 Hb_001205_240 0.0819212642 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
12 Hb_000220_010 0.0826447065 - - PREDICTED: uncharacterized protein LOC105630083 [Jatropha curcas]
13 Hb_003761_010 0.0826859931 - - alcohol dehydrogenase, putative [Ricinus communis]
14 Hb_000649_110 0.0834891132 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
15 Hb_008226_060 0.0843874808 - - PREDICTED: folic acid synthesis protein fol1-like [Jatropha curcas]
16 Hb_028962_020 0.08486072 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
17 Hb_000030_190 0.0849621642 - - PREDICTED: TATA-box-binding protein-like isoform X1 [Citrus sinensis]
18 Hb_000049_260 0.0892492848 - - WD-repeat protein, putative [Ricinus communis]
19 Hb_002026_210 0.0900147726 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
20 Hb_000099_080 0.0900983096 - - kinesin light chain, putative [Ricinus communis]

Gene co-expression network

sample Hb_010997_080 Hb_010997_080 Hb_002205_110 Hb_002205_110 Hb_010997_080--Hb_002205_110 Hb_000441_140 Hb_000441_140 Hb_010997_080--Hb_000441_140 Hb_000028_370 Hb_000028_370 Hb_010997_080--Hb_000028_370 Hb_000173_490 Hb_000173_490 Hb_010997_080--Hb_000173_490 Hb_003389_040 Hb_003389_040 Hb_010997_080--Hb_003389_040 Hb_005048_130 Hb_005048_130 Hb_010997_080--Hb_005048_130 Hb_002205_110--Hb_000028_370 Hb_001205_240 Hb_001205_240 Hb_002205_110--Hb_001205_240 Hb_002232_410 Hb_002232_410 Hb_002205_110--Hb_002232_410 Hb_001408_040 Hb_001408_040 Hb_002205_110--Hb_001408_040 Hb_002205_110--Hb_000441_140 Hb_002026_210 Hb_002026_210 Hb_000441_140--Hb_002026_210 Hb_000441_140--Hb_001205_240 Hb_000441_140--Hb_000028_370 Hb_000030_190 Hb_000030_190 Hb_000441_140--Hb_000030_190 Hb_000028_370--Hb_001205_240 Hb_008725_230 Hb_008725_230 Hb_000028_370--Hb_008725_230 Hb_000028_370--Hb_002232_410 Hb_003761_010 Hb_003761_010 Hb_000028_370--Hb_003761_010 Hb_168978_010 Hb_168978_010 Hb_000028_370--Hb_168978_010 Hb_031284_040 Hb_031284_040 Hb_000173_490--Hb_031284_040 Hb_001409_020 Hb_001409_020 Hb_000173_490--Hb_001409_020 Hb_000173_490--Hb_000030_190 Hb_010618_010 Hb_010618_010 Hb_000173_490--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000173_490--Hb_001248_060 Hb_001635_090 Hb_001635_090 Hb_000173_490--Hb_001635_090 Hb_008226_060 Hb_008226_060 Hb_003389_040--Hb_008226_060 Hb_007101_300 Hb_007101_300 Hb_003389_040--Hb_007101_300 Hb_000032_380 Hb_000032_380 Hb_003389_040--Hb_000032_380 Hb_000417_040 Hb_000417_040 Hb_003389_040--Hb_000417_040 Hb_000357_110 Hb_000357_110 Hb_003389_040--Hb_000357_110 Hb_156635_010 Hb_156635_010 Hb_003389_040--Hb_156635_010 Hb_028285_010 Hb_028285_010 Hb_005048_130--Hb_028285_010 Hb_000062_070 Hb_000062_070 Hb_005048_130--Hb_000062_070 Hb_112798_020 Hb_112798_020 Hb_005048_130--Hb_112798_020 Hb_005048_130--Hb_001408_040 Hb_000530_010 Hb_000530_010 Hb_005048_130--Hb_000530_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.766498 1.26219 0.58661 0.923233 0.691412 1.21639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.967948 1.19202 0.692291 0.714671 0.515061

CAGE analysis