Hb_010997_090

Information

Type transcription factor
Description TF Family: mTERF
Location Contig10997: 52614-55887
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa019510mg
description hypothetical protein
nr
ID XP_007219362.1
description hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
swissprot
ID -
description -
trembl
ID M5X4Z6
description Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa019510mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02929: 54481-54882
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010997_090 0.0 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
2 Hb_001489_110 0.0876993146 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Citrus sinensis]
3 Hb_000060_050 0.0942366177 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
4 Hb_066842_010 0.0948064899 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
5 Hb_002660_170 0.096916374 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
6 Hb_001269_190 0.0977406314 - - PREDICTED: Golgi SNAP receptor complex member 1-1 [Jatropha curcas]
7 Hb_000590_120 0.1062612693 - - dehydroascorbate reductase, putative [Ricinus communis]
8 Hb_180343_010 0.1078414658 - - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, putative [Ricinus communis]
9 Hb_002110_100 0.1116858312 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
10 Hb_032920_070 0.1120625651 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
11 Hb_000297_120 0.1150413701 - - PREDICTED: sorting nexin 1 [Jatropha curcas]
12 Hb_001662_130 0.1166731676 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
13 Hb_000046_170 0.1185374591 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]
14 Hb_006683_070 0.1185959303 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
15 Hb_004007_110 0.1189884436 - - PREDICTED: mitochondrial outer membrane protein porin 2-like [Jatropha curcas]
16 Hb_012305_130 0.1192407615 - - PREDICTED: GTP-binding protein SAR1A [Jatropha curcas]
17 Hb_000700_040 0.1204180705 - - UDP-Glycosyltransferase superfamily protein isoform 4 [Theobroma cacao]
18 Hb_000649_140 0.1204459913 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
19 Hb_000240_030 0.1209578398 - - conserved hypothetical protein [Ricinus communis]
20 Hb_005653_070 0.1219152249 - - K+ transport growth defect-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_010997_090 Hb_010997_090 Hb_001489_110 Hb_001489_110 Hb_010997_090--Hb_001489_110 Hb_000060_050 Hb_000060_050 Hb_010997_090--Hb_000060_050 Hb_066842_010 Hb_066842_010 Hb_010997_090--Hb_066842_010 Hb_002660_170 Hb_002660_170 Hb_010997_090--Hb_002660_170 Hb_001269_190 Hb_001269_190 Hb_010997_090--Hb_001269_190 Hb_000590_120 Hb_000590_120 Hb_010997_090--Hb_000590_120 Hb_001489_110--Hb_000060_050 Hb_001353_010 Hb_001353_010 Hb_001489_110--Hb_001353_010 Hb_002995_050 Hb_002995_050 Hb_001489_110--Hb_002995_050 Hb_185255_010 Hb_185255_010 Hb_001489_110--Hb_185255_010 Hb_001489_110--Hb_001269_190 Hb_025098_010 Hb_025098_010 Hb_001489_110--Hb_025098_010 Hb_003305_040 Hb_003305_040 Hb_000060_050--Hb_003305_040 Hb_000060_050--Hb_002660_170 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000252_100 Hb_000252_100 Hb_000060_050--Hb_000252_100 Hb_000173_410 Hb_000173_410 Hb_000060_050--Hb_000173_410 Hb_002392_010 Hb_002392_010 Hb_066842_010--Hb_002392_010 Hb_001946_390 Hb_001946_390 Hb_066842_010--Hb_001946_390 Hb_066842_010--Hb_000590_120 Hb_066842_010--Hb_001269_190 Hb_000185_220 Hb_000185_220 Hb_066842_010--Hb_000185_220 Hb_000136_100 Hb_000136_100 Hb_066842_010--Hb_000136_100 Hb_000025_190 Hb_000025_190 Hb_002660_170--Hb_000025_190 Hb_007218_120 Hb_007218_120 Hb_002660_170--Hb_007218_120 Hb_006059_010 Hb_006059_010 Hb_002660_170--Hb_006059_010 Hb_000012_310 Hb_000012_310 Hb_002660_170--Hb_000012_310 Hb_002477_290 Hb_002477_290 Hb_002660_170--Hb_002477_290 Hb_001269_190--Hb_185255_010 Hb_001269_190--Hb_002995_050 Hb_000179_270 Hb_000179_270 Hb_001269_190--Hb_000179_270 Hb_006683_070 Hb_006683_070 Hb_001269_190--Hb_006683_070 Hb_000087_070 Hb_000087_070 Hb_001269_190--Hb_000087_070 Hb_001662_130 Hb_001662_130 Hb_000590_120--Hb_001662_130 Hb_000240_030 Hb_000240_030 Hb_000590_120--Hb_000240_030 Hb_000590_120--Hb_001269_190 Hb_002110_100 Hb_002110_100 Hb_000590_120--Hb_002110_100 Hb_004951_060 Hb_004951_060 Hb_000590_120--Hb_004951_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.207435 0.350532 0.372145 1.11055 0.0594952 0.366856
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.564222 0.665439 0.499986 0.516851 0.665634

CAGE analysis