Hb_010998_030

Information

Type -
Description -
Location Contig10998: 68529-68920
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02941: 68473-68588 , PASA_asmbl_02942: 68691-72001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010998_030 0.0 - - -
2 Hb_083641_010 0.1734660743 - - SECY isoform 1 [Theobroma cacao]
3 Hb_002079_050 0.1996632668 - - hypothetical protein B456_004G182300 [Gossypium raimondii]
4 Hb_003992_040 0.20174715 - - Post-illumination chlorophyll fluorescence increase isoform 5 [Theobroma cacao]
5 Hb_002079_030 0.2081358634 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Jatropha curcas]
6 Hb_000333_080 0.213719083 - - PREDICTED: uncharacterized protein LOC105637962 isoform X1 [Jatropha curcas]
7 Hb_142328_010 0.2142485738 - - PREDICTED: uncharacterized protein LOC105630513 isoform X1 [Jatropha curcas]
8 Hb_077549_010 0.2205110632 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
9 Hb_004738_030 0.2207284968 - - Inactive protein kinase [Gossypium arboreum]
10 Hb_134429_010 0.2276176429 - - conserved hypothetical protein [Ricinus communis]
11 Hb_150023_010 0.2283832381 - - 50S ribosomal protein L2, putative [Ricinus communis]
12 Hb_000317_140 0.229373391 - - hypothetical protein CISIN_1g0019781mg, partial [Citrus sinensis]
13 Hb_002027_180 0.2309212057 - - PREDICTED: receptor-like cytosolic serine/threonine-protein kinase RBK2 [Jatropha curcas]
14 Hb_005656_070 0.2312403226 - - PREDICTED: cryptochrome DASH, chloroplastic/mitochondrial [Jatropha curcas]
15 Hb_002311_330 0.2344400529 - - protein phosphatase 2c, putative [Ricinus communis]
16 Hb_007477_050 0.2351320553 - - PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Jatropha curcas]
17 Hb_000260_720 0.2367695808 - - PREDICTED: ADP-ribosylation factor-like, partial [Nicotiana tomentosiformis]
18 Hb_029584_040 0.2380716185 - - hypothetical protein Csa_1G586790 [Cucumis sativus]
19 Hb_000086_410 0.2381758431 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
20 Hb_000094_290 0.2382538981 - - PREDICTED: outer envelope pore protein 24B, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_010998_030 Hb_010998_030 Hb_083641_010 Hb_083641_010 Hb_010998_030--Hb_083641_010 Hb_002079_050 Hb_002079_050 Hb_010998_030--Hb_002079_050 Hb_003992_040 Hb_003992_040 Hb_010998_030--Hb_003992_040 Hb_002079_030 Hb_002079_030 Hb_010998_030--Hb_002079_030 Hb_000333_080 Hb_000333_080 Hb_010998_030--Hb_000333_080 Hb_142328_010 Hb_142328_010 Hb_010998_030--Hb_142328_010 Hb_083641_010--Hb_142328_010 Hb_083641_010--Hb_002079_030 Hb_050912_010 Hb_050912_010 Hb_083641_010--Hb_050912_010 Hb_004724_470 Hb_004724_470 Hb_083641_010--Hb_004724_470 Hb_005048_140 Hb_005048_140 Hb_083641_010--Hb_005048_140 Hb_002079_050--Hb_142328_010 Hb_002200_040 Hb_002200_040 Hb_002079_050--Hb_002200_040 Hb_002079_050--Hb_002079_030 Hb_150023_010 Hb_150023_010 Hb_002079_050--Hb_150023_010 Hb_006810_030 Hb_006810_030 Hb_002079_050--Hb_006810_030 Hb_026745_020 Hb_026745_020 Hb_002079_050--Hb_026745_020 Hb_026228_020 Hb_026228_020 Hb_003992_040--Hb_026228_020 Hb_002027_180 Hb_002027_180 Hb_003992_040--Hb_002027_180 Hb_001829_040 Hb_001829_040 Hb_003992_040--Hb_001829_040 Hb_002084_010 Hb_002084_010 Hb_003992_040--Hb_002084_010 Hb_012760_130 Hb_012760_130 Hb_003992_040--Hb_012760_130 Hb_000617_010 Hb_000617_010 Hb_003992_040--Hb_000617_010 Hb_001828_040 Hb_001828_040 Hb_002079_030--Hb_001828_040 Hb_069662_010 Hb_069662_010 Hb_002079_030--Hb_069662_010 Hb_002079_030--Hb_142328_010 Hb_011486_040 Hb_011486_040 Hb_002079_030--Hb_011486_040 Hb_002079_030--Hb_000333_080 Hb_004531_140 Hb_004531_140 Hb_002079_030--Hb_004531_140 Hb_000333_080--Hb_069662_010 Hb_002184_150 Hb_002184_150 Hb_000333_080--Hb_002184_150 Hb_004994_050 Hb_004994_050 Hb_000333_080--Hb_004994_050 Hb_000333_080--Hb_011486_040 Hb_000327_110 Hb_000327_110 Hb_000333_080--Hb_000327_110 Hb_142328_010--Hb_006810_030 Hb_012194_050 Hb_012194_050 Hb_142328_010--Hb_012194_050 Hb_001898_210 Hb_001898_210 Hb_142328_010--Hb_001898_210 Hb_152202_010 Hb_152202_010 Hb_142328_010--Hb_152202_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.769848 1.47047 3.12418 5.19132 1.25414 5.54079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53584 1.21007 0.427903 0 3.25047

CAGE analysis