Hb_011004_010

Information

Type -
Description -
Location Contig11004: 9832-13133
Sequence    

Annotation

kegg
ID rcu:RCOM_1494540
description Mitochondrial carnitine/acylcarnitine carrier protein, putative
nr
ID XP_002516060.1
description Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
swissprot
ID Q9CA93
description Mitochondrial arginine transporter BAC2 OS=Arabidopsis thaliana GN=BAC2 PE=1 SV=1
trembl
ID B9RQP1
description Mitochondrial carnitine/acylcarnitine carrier protein, putative OS=Ricinus communis GN=RCOM_1494540 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial substrate carrier family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011004_010 0.0 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
2 Hb_000032_040 0.083708911 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
3 Hb_001507_070 0.092217753 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000575_020 0.0965184967 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
5 Hb_000742_270 0.1001235065 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
6 Hb_003371_100 0.104854479 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
7 Hb_000175_610 0.1124786512 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
8 Hb_001035_040 0.1313547213 - - unnamed protein product [Coffea canephora]
9 Hb_148121_010 0.1349792396 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000260_580 0.1351722628 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001268_080 0.1390398121 - - catalytic, putative [Ricinus communis]
12 Hb_004738_010 0.1402435858 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
13 Hb_001006_180 0.1413801703 - - PREDICTED: endonuclease V-like [Jatropha curcas]
14 Hb_003020_310 0.1434567369 - - glycosyltransferase, putative [Ricinus communis]
15 Hb_024714_060 0.1454697838 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
16 Hb_005000_160 0.1481867458 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
17 Hb_000803_050 0.1507550836 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
18 Hb_002027_400 0.1517897906 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
19 Hb_001785_040 0.1522197928 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
20 Hb_000107_070 0.1528053321 - - PREDICTED: uncharacterized protein LOC105641007 [Jatropha curcas]

Gene co-expression network

sample Hb_011004_010 Hb_011004_010 Hb_000032_040 Hb_000032_040 Hb_011004_010--Hb_000032_040 Hb_001507_070 Hb_001507_070 Hb_011004_010--Hb_001507_070 Hb_000575_020 Hb_000575_020 Hb_011004_010--Hb_000575_020 Hb_000742_270 Hb_000742_270 Hb_011004_010--Hb_000742_270 Hb_003371_100 Hb_003371_100 Hb_011004_010--Hb_003371_100 Hb_000175_610 Hb_000175_610 Hb_011004_010--Hb_000175_610 Hb_001762_060 Hb_001762_060 Hb_000032_040--Hb_001762_060 Hb_001006_180 Hb_001006_180 Hb_000032_040--Hb_001006_180 Hb_000032_040--Hb_000742_270 Hb_004738_010 Hb_004738_010 Hb_000032_040--Hb_004738_010 Hb_002119_120 Hb_002119_120 Hb_000032_040--Hb_002119_120 Hb_001507_070--Hb_000742_270 Hb_001507_070--Hb_003371_100 Hb_148121_010 Hb_148121_010 Hb_001507_070--Hb_148121_010 Hb_000215_180 Hb_000215_180 Hb_001507_070--Hb_000215_180 Hb_001507_070--Hb_000032_040 Hb_004108_090 Hb_004108_090 Hb_000575_020--Hb_004108_090 Hb_000575_020--Hb_000032_040 Hb_000575_020--Hb_001507_070 Hb_000575_020--Hb_000742_270 Hb_000012_130 Hb_000012_130 Hb_000575_020--Hb_000012_130 Hb_000742_270--Hb_148121_010 Hb_001268_080 Hb_001268_080 Hb_000742_270--Hb_001268_080 Hb_024714_060 Hb_024714_060 Hb_000742_270--Hb_024714_060 Hb_005000_160 Hb_005000_160 Hb_003371_100--Hb_005000_160 Hb_000260_580 Hb_000260_580 Hb_003371_100--Hb_000260_580 Hb_003371_100--Hb_000742_270 Hb_003371_100--Hb_000175_610 Hb_000175_610--Hb_000260_580 Hb_000175_610--Hb_000742_270 Hb_000175_610--Hb_001507_070 Hb_000175_610--Hb_148121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.963 2.43623 2.33215 4.15574 3.46219 8.17731
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
69.5651 45.1511 44.6608 6.09954 5.79993

CAGE analysis