Hb_011004_020

Information

Type -
Description -
Location Contig11004: 13244-16035
Sequence    

Annotation

kegg
ID pop:POPTR_0001s18240g
description POPTRDRAFT_548840; pyridoxin biosynthesis PDX1-like protein 2
nr
ID XP_012073347.1
description PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
swissprot
ID Q9ZNR6
description Pyridoxal 5'-phosphate synthase-like subunit PDX1.2 OS=Arabidopsis thaliana GN=PDX12 PE=1 SV=1
trembl
ID A0A067KMB7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06283 PE=4 SV=1
Gene Ontology
ID GO:0005829
description probable pyridoxal biosynthesis protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03095: 13714-14068
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011004_020 0.0 - - PREDICTED: pyridoxal 5'-phosphate synthase-like subunit PDX1.2 [Jatropha curcas]
2 Hb_001322_170 0.1287498606 - - PREDICTED: bax inhibitor 1-like [Jatropha curcas]
3 Hb_000028_040 0.1519274281 - - PREDICTED: prostaglandin E synthase 2-like [Jatropha curcas]
4 Hb_001369_370 0.1539219989 - - PREDICTED: 23.6 kDa heat shock protein, mitochondrial [Jatropha curcas]
5 Hb_003656_110 0.1547271139 - - phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
6 Hb_000883_030 0.159558885 - - PREDICTED: uncharacterized protein LOC105636683 [Jatropha curcas]
7 Hb_019516_030 0.1609963998 - - Calcyclin-binding protein, putative [Ricinus communis]
8 Hb_031421_010 0.1628213003 - - PREDICTED: copper chaperone for superoxide dismutase, chloroplastic/cytosolic [Jatropha curcas]
9 Hb_000363_460 0.1630052946 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_002890_180 0.1660004971 - - PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 [Jatropha curcas]
11 Hb_048476_170 0.1705894949 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-II-like [Citrus sinensis]
12 Hb_000454_190 0.1712627959 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
13 Hb_007304_110 0.173564053 - - PREDICTED: type I inositol 1,4,5-trisphosphate 5-phosphatase 1 isoform X3 [Jatropha curcas]
14 Hb_000982_050 0.1757817539 - - PREDICTED: uncharacterized protein LOC105643124 isoform X1 [Jatropha curcas]
15 Hb_003605_110 0.1786827718 - - PREDICTED: putative 1-phosphatidylinositol-3-phosphate 5-kinase FAB1D isoform X1 [Jatropha curcas]
16 Hb_004635_080 0.1788712244 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_001136_090 0.1793184463 - - Protein PNS1, putative [Ricinus communis]
18 Hb_028227_030 0.1793409953 - - PREDICTED: uncharacterized protein LOC105644817 isoform X1 [Jatropha curcas]
19 Hb_000003_290 0.1809333547 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
20 Hb_002233_100 0.1810585633 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 6-like [Malus domestica]

Gene co-expression network

sample Hb_011004_020 Hb_011004_020 Hb_001322_170 Hb_001322_170 Hb_011004_020--Hb_001322_170 Hb_000028_040 Hb_000028_040 Hb_011004_020--Hb_000028_040 Hb_001369_370 Hb_001369_370 Hb_011004_020--Hb_001369_370 Hb_003656_110 Hb_003656_110 Hb_011004_020--Hb_003656_110 Hb_000883_030 Hb_000883_030 Hb_011004_020--Hb_000883_030 Hb_019516_030 Hb_019516_030 Hb_011004_020--Hb_019516_030 Hb_001243_040 Hb_001243_040 Hb_001322_170--Hb_001243_040 Hb_000313_260 Hb_000313_260 Hb_001322_170--Hb_000313_260 Hb_018133_040 Hb_018133_040 Hb_001322_170--Hb_018133_040 Hb_001696_010 Hb_001696_010 Hb_001322_170--Hb_001696_010 Hb_001632_040 Hb_001632_040 Hb_001322_170--Hb_001632_040 Hb_007304_110 Hb_007304_110 Hb_001322_170--Hb_007304_110 Hb_004512_020 Hb_004512_020 Hb_000028_040--Hb_004512_020 Hb_000028_040--Hb_003656_110 Hb_002872_020 Hb_002872_020 Hb_000028_040--Hb_002872_020 Hb_011344_010 Hb_011344_010 Hb_000028_040--Hb_011344_010 Hb_001427_170 Hb_001427_170 Hb_000028_040--Hb_001427_170 Hb_000352_110 Hb_000352_110 Hb_000028_040--Hb_000352_110 Hb_001369_370--Hb_019516_030 Hb_000062_110 Hb_000062_110 Hb_001369_370--Hb_000062_110 Hb_000941_140 Hb_000941_140 Hb_001369_370--Hb_000941_140 Hb_001235_100 Hb_001235_100 Hb_001369_370--Hb_001235_100 Hb_000454_190 Hb_000454_190 Hb_001369_370--Hb_000454_190 Hb_032202_170 Hb_032202_170 Hb_003656_110--Hb_032202_170 Hb_003097_190 Hb_003097_190 Hb_003656_110--Hb_003097_190 Hb_003656_110--Hb_004512_020 Hb_011457_160 Hb_011457_160 Hb_003656_110--Hb_011457_160 Hb_002890_180 Hb_002890_180 Hb_003656_110--Hb_002890_180 Hb_004117_100 Hb_004117_100 Hb_000883_030--Hb_004117_100 Hb_003912_030 Hb_003912_030 Hb_000883_030--Hb_003912_030 Hb_000363_460 Hb_000363_460 Hb_000883_030--Hb_000363_460 Hb_001440_040 Hb_001440_040 Hb_000883_030--Hb_001440_040 Hb_002233_100 Hb_002233_100 Hb_000883_030--Hb_002233_100 Hb_000853_210 Hb_000853_210 Hb_000883_030--Hb_000853_210 Hb_019516_030--Hb_000454_190 Hb_019516_030--Hb_000062_110 Hb_019516_030--Hb_000941_140 Hb_004635_080 Hb_004635_080 Hb_019516_030--Hb_004635_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5536 19.0146 9.60598 15.007 78.4393 18.9307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5347 21.0235 27.1481 14.1518 39.7052

CAGE analysis