Hb_011010_010

Information

Type -
Description -
Location Contig11010: 9613-16435
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044383.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011010_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_011639_140 0.0003447791 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
3 Hb_000640_010 0.002233632 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]
4 Hb_002659_100 0.0063959516 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
5 Hb_111985_020 0.0079040398 - - -
6 Hb_001013_020 0.0154809457 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006642_010 0.0636308586 - - -
8 Hb_020111_010 0.0653456723 - - PREDICTED: uncharacterized protein LOC102661177 [Glycine max]
9 Hb_004147_050 0.0694757147 - - hypothetical protein JCGZ_03640 [Jatropha curcas]
10 Hb_003506_060 0.1320143515 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]
11 Hb_003147_030 0.1328376621 transcription factor TF Family: Jumonji transcription factor, putative [Ricinus communis]
12 Hb_138358_010 0.1330692359 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
13 Hb_004642_010 0.1334286999 - - Integrase core domain, putative [Oryza sativa Japonica Group]
14 Hb_000270_570 0.1359545975 - - PREDICTED: peroxidase 65-like [Jatropha curcas]
15 Hb_004724_110 0.1369422873 - - alpha-1,2-fucosyltransferase [Populus tremula x Populus alba]
16 Hb_000922_230 0.1402765438 - - -
17 Hb_001768_030 0.1420334227 - - -
18 Hb_001827_020 0.1459465558 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_011269_050 0.1467197692 - - -
20 Hb_077421_010 0.1485940688 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]

Gene co-expression network

sample Hb_011010_010 Hb_011010_010 Hb_011639_140 Hb_011639_140 Hb_011010_010--Hb_011639_140 Hb_000640_010 Hb_000640_010 Hb_011010_010--Hb_000640_010 Hb_002659_100 Hb_002659_100 Hb_011010_010--Hb_002659_100 Hb_111985_020 Hb_111985_020 Hb_011010_010--Hb_111985_020 Hb_001013_020 Hb_001013_020 Hb_011010_010--Hb_001013_020 Hb_006642_010 Hb_006642_010 Hb_011010_010--Hb_006642_010 Hb_011639_140--Hb_000640_010 Hb_011639_140--Hb_002659_100 Hb_011639_140--Hb_111985_020 Hb_011639_140--Hb_001013_020 Hb_011639_140--Hb_006642_010 Hb_000640_010--Hb_002659_100 Hb_000640_010--Hb_111985_020 Hb_000640_010--Hb_001013_020 Hb_000640_010--Hb_006642_010 Hb_002659_100--Hb_111985_020 Hb_002659_100--Hb_001013_020 Hb_002659_100--Hb_006642_010 Hb_111985_020--Hb_001013_020 Hb_111985_020--Hb_006642_010 Hb_020111_010 Hb_020111_010 Hb_001013_020--Hb_020111_010 Hb_003147_030 Hb_003147_030 Hb_006642_010--Hb_003147_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0122029 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00445891 0

CAGE analysis