Hb_011021_030

Information

Type -
Description -
Location Contig11021: 22437-25876
Sequence    

Annotation

kegg
ID rcu:RCOM_1719990
description hypothetical protein
nr
ID XP_012085102.1
description PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
swissprot
ID Q9CAC4
description Myosin-binding protein 2 OS=Arabidopsis thaliana GN=MYOB2 PE=1 SV=1
trembl
ID A0A067JUA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17541 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_03176: 22646-24376 , PASA_asmbl_03177: 22593-24417 , PASA_asmbl_03178: 24487-24788
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011021_030 0.0 - - PREDICTED: uncharacterized protein LOC105644390 [Jatropha curcas]
2 Hb_000005_050 0.0879179639 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
3 Hb_000050_120 0.1083085241 - - PREDICTED: uncharacterized protein LOC105630790 [Jatropha curcas]
4 Hb_002172_030 0.1089223251 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105639104 isoform X1 [Jatropha curcas]
5 Hb_012654_020 0.1119586762 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003656_030 0.1129736569 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
7 Hb_002078_040 0.1164952374 - - protein with unknown function [Ricinus communis]
8 Hb_154381_050 0.1166160223 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000300_530 0.1180199653 - - PREDICTED: uncharacterized protein DDB_G0286299-like [Gossypium raimondii]
10 Hb_000988_050 0.1192881352 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001846_080 0.1231010353 - - PREDICTED: poly(rC)-binding protein 3-like [Nicotiana sylvestris]
12 Hb_003777_220 0.1235190064 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 41 isoform X1 [Jatropha curcas]
13 Hb_003906_110 0.1246315202 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
14 Hb_004648_040 0.1250534028 - - PREDICTED: uncharacterized protein LOC105643056 [Jatropha curcas]
15 Hb_176022_020 0.125627855 - - cytochrome P450, putative [Ricinus communis]
16 Hb_004156_060 0.126015545 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
17 Hb_098315_100 0.1274419403 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
18 Hb_019613_020 0.1296226678 - - phospholipase C, putative [Ricinus communis]
19 Hb_019654_070 0.1297166822 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
20 Hb_043959_010 0.132760267 - - PREDICTED: transcriptional activator DEMETER isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_011021_030 Hb_011021_030 Hb_000005_050 Hb_000005_050 Hb_011021_030--Hb_000005_050 Hb_000050_120 Hb_000050_120 Hb_011021_030--Hb_000050_120 Hb_002172_030 Hb_002172_030 Hb_011021_030--Hb_002172_030 Hb_012654_020 Hb_012654_020 Hb_011021_030--Hb_012654_020 Hb_003656_030 Hb_003656_030 Hb_011021_030--Hb_003656_030 Hb_002078_040 Hb_002078_040 Hb_011021_030--Hb_002078_040 Hb_019613_020 Hb_019613_020 Hb_000005_050--Hb_019613_020 Hb_176022_020 Hb_176022_020 Hb_000005_050--Hb_176022_020 Hb_000984_180 Hb_000984_180 Hb_000005_050--Hb_000984_180 Hb_003404_030 Hb_003404_030 Hb_000005_050--Hb_003404_030 Hb_011316_030 Hb_011316_030 Hb_000005_050--Hb_011316_030 Hb_000050_120--Hb_002078_040 Hb_003304_080 Hb_003304_080 Hb_000050_120--Hb_003304_080 Hb_000365_350 Hb_000365_350 Hb_000050_120--Hb_000365_350 Hb_000050_120--Hb_002172_030 Hb_000050_120--Hb_012654_020 Hb_007810_040 Hb_007810_040 Hb_000050_120--Hb_007810_040 Hb_002172_030--Hb_012654_020 Hb_001846_080 Hb_001846_080 Hb_002172_030--Hb_001846_080 Hb_005410_010 Hb_005410_010 Hb_002172_030--Hb_005410_010 Hb_011609_190 Hb_011609_190 Hb_002172_030--Hb_011609_190 Hb_154381_050 Hb_154381_050 Hb_002172_030--Hb_154381_050 Hb_012654_020--Hb_005410_010 Hb_012654_020--Hb_011609_190 Hb_012654_020--Hb_002078_040 Hb_001776_080 Hb_001776_080 Hb_012654_020--Hb_001776_080 Hb_005488_070 Hb_005488_070 Hb_003656_030--Hb_005488_070 Hb_007178_010 Hb_007178_010 Hb_003656_030--Hb_007178_010 Hb_000208_240 Hb_000208_240 Hb_003656_030--Hb_000208_240 Hb_019654_070 Hb_019654_070 Hb_003656_030--Hb_019654_070 Hb_003627_020 Hb_003627_020 Hb_003656_030--Hb_003627_020 Hb_004126_010 Hb_004126_010 Hb_003656_030--Hb_004126_010 Hb_002078_040--Hb_003304_080 Hb_002078_040--Hb_007810_040 Hb_002078_040--Hb_002172_030 Hb_002078_040--Hb_154381_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.8596 3.05024 1.54993 4.37758 76.0839 73.1783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.4206 10.4811 35.287 3.3294 4.3443

CAGE analysis